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IMG-taxon 2619618996 annotated assembly

Organism name:
Palleronia salina (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 26892
BioSample:
SAMN04488012
BioProject:
PRJEB18309
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900141995.1 (latest)
RefSeq assembly accession:
GCF_900141995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FQZA01
Genome coverage:
357x

IDs: 910331 [UID] 3778288 [GenBank] 3841168 [RefSeq]

See Genome Information for Palleronia salina

History (Show revision history)

Comment

Global statistics

Total sequence length3,574,415
Total ungapped length3,573,943
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50253,185
Scaffold L505
Number of contigs32
Contig N50253,185
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,574,415303,573,943253,18520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Palleronia salinaPalleronia salina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900110115.1Palleronia pelagiatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.3287.0980.67

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected