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IMG-taxon 2585428147 annotated assembly

Organism name:
Thiothrix eikelboomii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 49788
BioSample:
SAMN02745130
BioProject:
PRJEB19580
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/03/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900167255.1 (latest)
RefSeq assembly accession:
GCF_900167255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FUYB01
Genome coverage:
194x

IDs: 1021551 [UID] 4186568 [GenBank] 4195498 [RefSeq]

See Genome Information for Thiothrix eikelboomii

History (Show revision history)

Comment

Global statistics

Total sequence length4,158,727
Total ungapped length4,147,869
Gaps between scaffolds0
Number of scaffolds50
Scaffold N50131,932
Scaffold L508
Number of contigs60
Contig N50118,719
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,158,727504,147,869131,932100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thiothrix eikelboomiiThiothrix eikelboomii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022828425.1Candidatus Thiothrix sulfatifontissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.031.581.77

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected