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IMG-taxon 2671180116 annotated assembly

Organism name:
Dethiosulfovibrio salsuginis (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USBA 82
BioSample:
SAMN06275492
BioProject:
PRJEB20281
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/04/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900177735.1 (latest)
RefSeq assembly accession:
GCF_900177735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FXBB01
Genome coverage:
682x

IDs: 1081411 [UID] 4416578 [GenBank] 4426338 [RefSeq]

See Genome Information for Dethiosulfovibrio salsuginis

History (Show revision history)

Comment

Global statistics

Total sequence length2,684,322
Total ungapped length2,681,495
Gaps between scaffolds0
Number of scaffolds68
Scaffold N5066,066
Scaffold L5013
Number of contigs72
Contig N5066,066
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,684,322682,681,49566,06640

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dethiosulfovibrio salsuginisDethiosulfovibrio salsuginis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000172975.1Dethiosulfovibrio peptidovoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.406.626.89

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected