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Source database (GenBank or RefSeq) File type

fAstCal1.2

This assembly has been replaced. See current version

Organism name:

Astatotilapia calliptera (eastern happy)

BioSample:

SAMEA104026430

BioProject:

PRJEB24325

Submitter:

Date:

2018/05/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_900246225.3 (replaced)

RefSeq assembly accession:

GCF_900246225.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

OFHY03

Genome coverage:

80x

IDs: 1967401 [UID] 6586538 [GenBank] 7211038 [RefSeq]

See Genome Information for Astatotilapia calliptera

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900246225.5	n/a	n/a	fAstCal1.3	Chromosome	Latest GenBank
GCA_900246225.4	n/a	n/a	fAstCal1.3	Chromosome	GenBank suppressed
GCA_900246225.3	≠	GCF_900246225.1	fAstCal1.2	Chromosome	Latest RefSeq, Replaced GenBank
GCA_900246225.2	n/a	n/a	fAstCal1.2	Scaffold	Replaced GenBank
GCA_900246225.1	n/a	n/a	fAstCal1.1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	880,445,564
Total ungapped length	879,258,901
Gaps between scaffolds	0
Number of scaffolds	249
Scaffold N50	38,669,361
Scaffold L50	10
Number of contigs	739
Contig N50	4,438,245
Contig L50	58
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	364

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LS420019.1	=	NC_039302.1	0
Chromosome 2	LS420020.1	=	NC_039303.1	0
Chromosome 3	LS420021.1	=	NC_039304.1	0
Chromosome 4	LS420022.1	=	NC_039305.1	0
Chromosome 5	LS420023.1	=	NC_039306.1	0
Chromosome 6	LS420024.1	=	NC_039307.1	0
Chromosome 7	LS420025.1	=	NC_039308.1	0
Chromosome 8	LS420026.1	=	NC_039309.1	0
Chromosome 9	LS420027.1	=	NC_039310.1	0
Chromosome 10	LS420028.1	=	NC_039311.1	0
Chromosome 11	LS420029.1	=	NC_039312.1	0
Chromosome 12	LS420030.1	=	NC_039313.1	0
Chromosome 13	LS420031.1	=	NC_039314.1	0
Chromosome 14	LS420032.1	=	NC_039315.1	0
Chromosome 15	LS420033.1	=	NC_039316.1	0
Chromosome 16	LS420034.1	=	NC_039317.1	0
Chromosome 17	LS420035.1	=	NC_039318.1	0
Chromosome 18	LS420036.1	=	NC_039319.1	0
Chromosome 19	LS420037.1	=	NC_039320.1	0
Chromosome 20	LS420038.1	=	NC_039321.1	0
Chromosome 22	LS420039.1	=	NC_039322.1	0
Chromosome 23	LS420040.1	=	NC_039323.1	0
unplaced	n/a	n/a	n/a	226

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	880,428,986	248	879,242,323	38,669,361	490
Chromosome 1	41,162,407	1	41,161,732	41,162,407	9
Chromosome 2	38,215,696	1	38,214,796	38,215,696	15
Chromosome 3	52,512,415	1	52,278,096	52,512,415	77
Chromosome 4	33,433,079	1	33,208,579	33,433,079	23
Chromosome 5	38,678,279	1	38,677,479	38,678,279	11
Chromosome 6	41,428,020	1	41,426,674	41,428,020	23
Chromosome 7	68,397,778	1	68,381,153	68,397,778	24
Chromosome 8	25,827,708	1	25,811,983	25,827,708	12
Chromosome 9	35,913,139	1	35,871,089	35,913,139	33
Chromosome 10	34,074,121	1	34,072,946	34,074,121	17
Chromosome 11	36,676,067	1	36,625,542	36,676,067	10
Chromosome 12	38,669,361	1	38,668,336	38,669,361	17
Chromosome 13	33,145,951	1	33,145,276	33,145,951	14
Chromosome 14	39,985,354	1	39,984,793	39,985,354	9
Chromosome 15	40,222,765	1	40,146,890	40,222,765	13
Chromosome 16	35,801,853	1	35,800,678	35,801,853	20
Chromosome 17	39,448,915	1	39,428,115	39,448,915	12
Chromosome 18	35,852,588	1	35,826,760	35,852,588	21
Chromosome 19	30,863,130	1	30,436,055	30,863,130	22
Chromosome 20	31,467,755	1	31,466,930	31,467,755	15
Chromosome 22	35,011,464	1	34,970,664	35,011,464	15
Chromosome 23	43,921,804	1	43,920,289	43,921,804	27
unplaced	29,719,337	226	29,717,468	311,357	51

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fAstCal1.2

See Genome Information for Astatotilapia calliptera

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear