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Source database (GenBank or RefSeq) File type

cs10

Organism name:

Cannabis sativa (eudicots)

BioSample:

SAMEA5040675

BioProject:

PRJEB29284

Submitter:

HARVARD OEB

Date:

2019/02/14

Release type:

Minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_900626175.2 (latest)

RefSeq assembly accession:

GCF_900626175.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

UZAU01

Genome coverage:

100x

IDs: 6733311 [UID] 18713498 [GenBank] 19481728 [RefSeq]

See Genome Information for Cannabis sativa

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900626175.2	≠	GCF_900626175.2	cs10	Chromosome	Latest GenBank, RefSeq suppressed
GCA_900626175.1	≠	GCF_900626175.1	cs10	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

In April 2020 the chromosome names were renamed to use the community standard chromosome numbering.
 New Old GenBank RefSeq
 Name Name Accession Accession
------- ------ ---------- -----------
 1 2 LR213628.1 NC_044371.1
 2 6 LR213632.1 NC_044375.1
 3 3 LR213629.1 NC_044372.1
 4 ... 4 LR213630.1 NC_044373.1
 5 5 LR213631.1 NC_044374.1
 6 8 LR213634.1 NC_044377.1
 7 9 LR213635.1 NC_044378.1
 8 10 LR213636.1 NC_044379.1
 9 7 LR213633.1 NC_044376.1
 X 1 LR213627.1 NC_044370.1  more

Global statistics

Total sequence length	875,732,047
Total ungapped length	736,163,757
Gaps between scaffolds	10
Number of scaffolds	220
Scaffold N50	91,912,889
Scaffold L50	5
Number of contigs	1,051
Contig N50	1,959,202
Contig L50	102
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	1,051

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	875,732,047	220	736,163,757	91,912,889	833	10
Chromosome 1	101,209,240	1	73,196,915	101,208,250	161	1
Chromosome 2	96,346,938	1	76,974,542	96,345,948	72	1
Chromosome 3	94,670,641	1	77,075,555	94,669,651	112	1
Chromosome 4	91,913,879	1	77,402,571	91,912,889	50	1
Chromosome 5	88,181,582	1	80,700,927	88,180,592	144	1
Chromosome 6	79,335,105	1	74,511,177	79,334,115	39	1
Chromosome 7	71,238,074	1	60,637,511	71,237,084	57	1
Chromosome 8	64,622,176	1	54,522,012	64,621,186	65	1
Chromosome 9	61,561,104	1	53,389,190	61,560,114	51	1
Chromosome X	104,987,320	1	86,087,369	104,986,330	82	1
unplaced	21,665,988	210	21,665,988	269,573	0	0

Assembly

Genome Assembly

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Download Assembly

cs10

See Genome Information for Cannabis sativa

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR213628.1	=	NC_044371.1	0
Chromosome 2	LR213632.1	=	NC_044375.1	0
Chromosome 3	LR213629.1	=	NC_044372.1	0
Chromosome 4	LR213630.1	=	NC_044373.1	0
Chromosome 5	LR213631.1	=	NC_044374.1	0
Chromosome 6	LR213634.1	=	NC_044377.1	0
Chromosome 7	LR213635.1	=	NC_044378.1	0
Chromosome 8	LR213636.1	=	NC_044379.1	0
Chromosome 9	LR213633.1	=	NC_044376.1	0
Chromosome X	LR213627.1	=	NC_044370.1	0
unplaced	n/a	n/a	n/a	210