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57675_E01

Organism name:
Actinobacillus pleuropneumoniae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC10976
BioSample:
SAMEA104210806
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/12/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900638445.1 (latest)
RefSeq assembly accession:
GCF_900638445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 2181301 [UID] 8124958 [GenBank] 8152718 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

There are 88 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2024 02:14:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,222
CDSs (total)::2,137
Genes (coding)::2,099
CDSs (with protein)::2,099
Genes (RNA)::85
rRNAs::8, 6, 6 (5S, 16S, 23S)
complete rRNAs::8, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::20 of 38
Pseudo Genes (incomplete)::19 of 38
Pseudo Genes (internal stop)::11 of 38
Pseudo Genes (multiple problems)::9 of 38
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,325,526
Total ungapped length2,325,526
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900638444.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR134515.1=NZ_LR134515.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,325,526

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus pleuropneumoniaeActinobacillus pleuropneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000178495.2Actinobacillus pleuropneumoniae serovar 1 str. 4074type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000178495.2Actinobacillus pleuropneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1693.8294.10
Best-match type98.1693.8294.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna