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Source database (GenBank or RefSeq) File type

Ch_v2.0.2

Organism name:

Clupea harengus (Atlantic herring)

BioSample:

SAMEA5339254

BioProject:

PRJEB31270

Submitter:

UPPSALA UNIVERISTY

Date:

2019/04/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_900700415.2 (latest)

RefSeq assembly accession:

GCF_900700415.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

CAADHV01

Genome coverage:

75x

IDs: 9587751 [UID] 25682298 [GenBank] 28016748 [RefSeq]

See Genome Information for Clupea harengus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900700415.2	≠	GCF_900700415.2	Ch_v2.0.2	Chromosome	Latest GenBank, Latest RefSeq
GCA_900700415.1	≠	GCF_900700415.1	Ch_v2.0.2	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	786,325,606
Total ungapped length	785,454,915
Gaps between scaffolds	0
Number of scaffolds	1,724
Scaffold N50	29,845,739
Scaffold L50	13
Number of contigs	3,714
Contig N50	1,006,413
Contig L50	198
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	3,687

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR535857.1	=	NC_045152.1	0
Chromosome 2	LR535858.1	=	NC_045153.1	0
Chromosome 3	LR535859.1	=	NC_045154.1	0
Chromosome 4	LR535860.1	=	NC_045155.1	0
Chromosome 5	LR535861.1	=	NC_045156.1	0
Chromosome 6	LR535862.1	=	NC_045157.1	0
Chromosome 7	LR535863.1	=	NC_045158.1	0
Chromosome 8	LR535864.1	=	NC_045159.1	0
Chromosome 9	LR535865.1	=	NC_045160.1	0
Chromosome 10	LR535866.1	=	NC_045161.1	0
Chromosome 11	LR535867.1	=	NC_045162.1	0
Chromosome 12	LR535868.1	=	NC_045163.1	0
Chromosome 13	LR535869.1	=	NC_045164.1	0
Chromosome 14	LR535870.1	=	NC_045165.1	0
Chromosome 15	LR535871.1	=	NC_045166.1	0
Chromosome 16	LR535872.1	=	NC_045167.1	0
Chromosome 17	LR535873.1	=	NC_045168.1	0
Chromosome 18	LR535874.1	=	NC_045169.1	0
Chromosome 19	LR535875.1	=	NC_045170.1	0
Chromosome 20	LR535876.1	=	NC_045171.1	0
Chromosome 21	LR535877.1	=	NC_045172.1	0
Chromosome 22	LR535878.1	=	NC_045173.1	0
Chromosome 23	LR535879.1	=	NC_045174.1	0
Chromosome 24	LR535880.1	=	NC_045175.1	0
Chromosome 25	LR535881.1	=	NC_045176.1	0
Chromosome 26	LR535882.1	=	NC_045177.1	0
unplaced	n/a	n/a	n/a	1,697

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	786,308,905	1,723	785,438,214	29,845,739	1,990
Chromosome 1	33,084,258	1	33,050,296	33,084,258	79
Chromosome 2	33,010,319	1	32,950,461	33,010,319	140
Chromosome 3	32,527,562	1	32,508,841	32,527,562	45
Chromosome 4	32,267,647	1	32,229,262	32,267,647	87
Chromosome 5	31,586,861	1	31,568,452	31,586,861	43
Chromosome 6	31,461,554	1	31,427,672	31,461,554	76
Chromosome 7	30,990,621	1	30,941,886	30,990,621	110
Chromosome 8	30,729,556	1	30,697,005	30,729,556	76
Chromosome 9	30,477,381	1	30,444,351	30,477,381	76
Chromosome 10	30,227,731	1	30,208,006	30,227,731	46
Chromosome 11	30,096,327	1	30,072,147	30,096,327	56
Chromosome 12	30,022,480	1	29,993,352	30,022,480	65
Chromosome 13	29,845,739	1	29,813,479	29,845,739	71
Chromosome 14	29,332,771	1	29,305,253	29,332,771	62
Chromosome 15	28,713,521	1	28,679,929	28,713,521	77
Chromosome 16	27,773,822	1	27,730,503	27,773,822	97
Chromosome 17	27,568,510	1	27,547,843	27,568,510	49
Chromosome 18	27,247,294	1	27,216,869	27,247,294	68
Chromosome 19	27,130,643	1	27,083,444	27,130,643	99
Chromosome 20	26,694,162	1	26,665,097	26,694,162	68
Chromosome 21	26,465,981	1	26,426,611	26,465,981	86
Chromosome 22	25,664,052	1	25,642,985	25,664,052	53
Chromosome 23	25,292,897	1	25,245,275	25,292,897	104
Chromosome 24	20,091,098	1	20,040,156	20,091,098	127
Chromosome 25	14,924,191	1	14,903,012	14,924,191	47
Chromosome 26	12,443,209	1	12,418,604	12,443,209	56
unplaced	60,638,718	1,697	60,627,423	64,242	27

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Download Assembly

Ch_v2.0.2

See Genome Information for Clupea harengus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear