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IDs: 2581011 [UID] 9354218 [GenBank] 11148358 [RefSeq]
The assembly fEcheNa1.1 is based on 62x PacBio data, 100x coverage 10X Genomics Chromium data, BioNano data and 112x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial ... PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. more
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