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Source database (GenBank or RefSeq) File type

fSclFor1.1

Organism name:

Scleropages formosus (Asian bonytongue)

BioSample:

SAMEA4872123

Submitter:

Date:

2019/04/11

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_900964775.1 (latest)

RefSeq assembly accession:

GCF_900964775.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

CAAHFQ01

Genome coverage:

72x

Linked assembly:

GCA_900964985.2 (alternate pseudohaplotype of diploid)

IDs: 2581021 [UID] 9354238 [GenBank] 9581718 [RefSeq]

See Genome Information for Scleropages formosus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900964775.1	≠	GCF_900964775.1	fSclFor1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly fSclFor1.1 is based on 
72x PacBio data, 
88x coverage 10X Genomics Chromium data, BioNano data and 
67x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial ... PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length	784,563,014
Total ungapped length	784,521,654
Gaps between scaffolds	0
Number of scaffolds	72
Scaffold N50	31,084,684
Scaffold L50	11
Number of contigs	217
Contig N50	9,102,216
Contig L50	31
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	72

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR584066.1	=	NC_041806.1	0
Chromosome 2	LR584067.1	=	NC_041807.1	0
Chromosome 3	LR584068.1	=	NC_041808.1	0
Chromosome 4	LR584069.1	=	NC_041809.1	0
Chromosome 5	LR584070.1	=	NC_041810.1	0
Chromosome 6	LR584071.1	=	NC_041811.1	0
Chromosome 7	LR584072.1	=	NC_041812.1	0
Chromosome 8	LR584073.1	=	NC_041813.1	0
Chromosome 9	LR584074.1	=	NC_041814.1	0
Chromosome 10	LR584075.1	=	NC_041815.1	0
Chromosome 11	LR584076.1	=	NC_041816.1	0
Chromosome 12	LR584077.1	=	NC_041817.1	0
Chromosome 13	LR584078.1	=	NC_041818.1	0
Chromosome 14	LR584079.1	=	NC_041819.1	0
Chromosome 15	LR584080.1	=	NC_041820.1	0
Chromosome 16	LR584081.1	=	NC_041821.1	0
Chromosome 17	LR584082.1	=	NC_041822.1	0
Chromosome 18	LR584083.1	=	NC_041823.1	0
Chromosome 19	LR584084.1	=	NC_041824.1	0
Chromosome 20	LR584085.1	=	NC_041825.1	0
Chromosome 21	LR584086.1	=	NC_041826.1	0
Chromosome 22	LR584087.1	=	NC_041827.1	0
Chromosome 23	LR584088.1	=	NC_041828.1	0
Chromosome 24	LR584089.1	=	NC_041829.1	0
Chromosome 25	LR584090.1	=	NC_041830.1	0
unplaced	n/a	n/a	n/a	46

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	784,546,363	71	784,505,003	31,084,684	145
Chromosome 1	54,115,380	1	54,114,754	54,115,380	8
Chromosome 2	43,577,283	1	43,576,383	43,577,283	9
Chromosome 3	40,850,809	1	40,849,096	40,850,809	10
Chromosome 4	39,064,107	1	39,063,107	39,064,107	6
Chromosome 5	38,535,925	1	38,534,525	38,535,925	10
Chromosome 6	38,292,110	1	38,290,594	38,292,110	8
Chromosome 7	33,206,717	1	33,206,104	33,206,717	7
Chromosome 8	32,818,754	1	32,817,701	32,818,754	4
Chromosome 9	32,798,776	1	32,796,711	32,798,776	9
Chromosome 10	31,950,756	1	31,949,765	31,950,756	7
Chromosome 11	31,084,684	1	31,084,371	31,084,684	4
Chromosome 12	29,733,308	1	29,732,708	29,733,308	2
Chromosome 13	29,668,380	1	29,668,067	29,668,380	4
Chromosome 14	28,155,003	1	28,153,590	28,155,003	7
Chromosome 15	28,024,580	1	28,024,454	28,024,580	3
Chromosome 16	27,323,948	1	27,323,439	27,323,948	6
Chromosome 17	27,284,362	1	27,283,876	27,284,362	2
Chromosome 18	26,243,056	1	26,242,056	26,243,056	6
Chromosome 19	25,980,614	1	25,980,501	25,980,614	2
Chromosome 20	25,884,345	1	25,884,232	25,884,345	2
Chromosome 21	25,217,654	1	25,217,241	25,217,654	5
Chromosome 22	24,519,324	1	24,519,111	24,519,324	3
Chromosome 23	22,791,526	1	22,791,037	22,791,526	3
Chromosome 24	21,794,140	1	21,790,027	21,794,140	3
Chromosome 25	19,076,140	1	19,075,740	19,076,140	4
unplaced	6,554,682	46	6,535,813	227,390	11

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fSclFor1.1

See Genome Information for Scleropages formosus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear