STF_HiC

Organism name:: Camarhynchus parvulus (birds)
BioSample:: SAMEA5603054
BioProject:: PRJEB32528
Submitter:: UPPSALA UNIVERISTY
Date:: 2019/09/06
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_901933205.1 (latest)
RefSeq assembly accession:: GCF_901933205.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CABFNF01
Genome coverage:: 31x

IDs: 4539651 [UID] 13665368 [GenBank] 13933528 [RefSeq]

See Genome Information for Camarhynchus parvulus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_901933205.1	=	GCF_901933205.1	STF_HiC	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,051,609,828
Total ungapped length	1,051,517,328
Gaps between scaffolds	0
Number of scaffolds	1,345
Scaffold N50	70,356,807
Scaffold L50	6
Number of contigs	1,530
Contig N50	16,035,651
Contig L50	19
Total number of chromosomes and plasmids	31
Number of component sequences (WGS or clone)	1,527

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR595696.1	=	NC_044571.1	0
Chromosome 2	LR595695.1	=	NC_044572.1	0
Chromosome 3	LR595697.1	=	NC_044573.1	0
Chromosome 4	LR595698.1	=	NC_044574.1	0
Chromosome 5	LR595701.1	=	NC_044575.1	0
Chromosome 6	LR595703.1	=	NC_044576.1	0
Chromosome 7	LR595702.1	=	NC_044577.1	0
Chromosome 8	LR595704.1	=	NC_044578.1	0
Chromosome 9	LR595705.1	=	NC_044579.1	0
Chromosome 10	LR595707.1	=	NC_044580.1	0
Chromosome 11	LR595706.1	=	NC_044581.1	0
Chromosome 12	LR595708.1	=	NC_044582.1	0
Chromosome 13	LR595710.1	=	NC_044583.1	0
Chromosome 14	LR595711.1	=	NC_044584.1	0
Chromosome 15	LR595713.1	=	NC_044585.1	0
Chromosome 1A	LR595699.1	=	NC_044586.1	0
Chromosome 17	LR595715.1	=	NC_044587.1	0
Chromosome 18	LR595714.1	=	NC_044588.1	0
Chromosome 19	LR595716.1	=	NC_044589.1	0
Chromosome 20	LR595712.1	=	NC_044590.1	0
Chromosome 21	LR595717.1	=	NC_044591.1	0
Chromosome 22	LR595723.1	=	NC_044592.1	0
Chromosome 23	LR595719.1	=	NC_044593.1	0
Chromosome 24	LR595718.1	=	NC_044594.1	0
Chromosome 25	LR595724.1	=	NC_044595.1	0
Chromosome 26	LR595720.1	=	NC_044596.1	0
Chromosome 27	LR595722.1	=	NC_044597.1	0
Chromosome 28	LR595721.1	=	NC_044598.1	0
Chromosome 29	LR595725.1	=	NC_044599.1	0
Chromosome 4A	LR595709.1	=	NC_044600.1	0
Chromosome Z	LR595700.1	=	NC_044601.1	0
unplaced	n/a	n/a	n/a	1,314

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,051,609,828	1,345	1,051,517,328	70,356,807	185
Chromosome 1	115,307,910	1	115,300,910	115,307,910	14
Chromosome 2	151,975,198	1	151,969,698	151,975,198	11
Chromosome 3	113,180,500	1	113,168,000	113,180,500	25
Chromosome 4	71,869,398	1	71,865,398	71,869,398	8
Chromosome 5	62,004,293	1	61,999,793	62,004,293	9
Chromosome 6	35,429,249	1	35,427,749	35,429,249	3
Chromosome 7	37,931,169	1	37,927,669	37,931,169	7
Chromosome 8	30,698,694	1	30,695,694	30,698,694	6
Chromosome 9	25,429,348	1	25,428,848	25,429,348	1
Chromosome 10	20,315,087	1	20,313,587	20,315,087	3
Chromosome 11	20,750,786	1	20,747,286	20,750,786	7
Chromosome 12	20,242,500	1	20,241,000	20,242,500	3
Chromosome 13	18,381,638	1	18,380,638	18,381,638	2
Chromosome 14	16,509,717	1	16,508,717	16,509,717	2
Chromosome 15	14,057,472	1	14,056,972	14,057,472	1
Chromosome 1A	70,678,068	1	70,675,568	70,678,068	5
Chromosome 17	11,493,000	1	11,492,000	11,493,000	2
Chromosome 18	12,127,492	1	12,126,992	12,127,492	1
Chromosome 19	11,153,188	1	11,151,688	11,153,188	3
Chromosome 20	14,799,631	1	14,796,131	14,799,631	7
Chromosome 21	7,903,448	1	7,902,948	7,903,448	1
Chromosome 22	4,935,710	1	4,933,710	4,935,710	4
Chromosome 23	7,046,529	1	7,045,029	7,046,529	3
Chromosome 24	7,720,073	1	7,719,073	7,720,073	2
Chromosome 25	3,265,682	1	3,263,682	3,265,682	4
Chromosome 26	6,820,980	1	6,819,980	6,820,980	2
Chromosome 27	5,764,500	1	5,762,000	5,764,500	5
Chromosome 28	5,921,243	1	5,920,743	5,921,243	1
Chromosome 29	3,096,680	1	3,096,180	3,096,680	1
Chromosome 4A	19,696,636	1	19,696,136	19,696,636	1
Chromosome Z	70,356,807	1	70,337,807	70,356,807	38
unplaced	34,747,202	1,314	34,745,702	45,289	3

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STF_HiC

See Genome Information for Camarhynchus parvulus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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