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IDs: 3789471 [UID] 12009968 [GenBank] 12231168 [RefSeq]
The assembly fSalaFa1.1 is based on 96x PacBio data, 61x coverage 10X Genomics Chromium data, and 89x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute, and BioNano data generated by the DeepSeq facility at the University of ... Nottingham. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_000188235.1 assembly of Nile Tilapia (Oreochromis niloticus). more
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