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eAstRub1.3

Organism name:
Asterias rubens (European starfish)
BioSample:
SAMEA994741
BioProject:
PRJEB33974
Submitter:
SC
Date:
2020/02/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902459465.3 (latest)
RefSeq assembly accession:
GCF_902459465.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CABPRM03
Genome coverage:
103x

IDs: 5861501 [UID] 16850268 [GenBank] 18980918 [RefSeq]

See Genome Information for Asterias rubens

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The assembly eAstRub1.3 is based on 103x PacBio data, 150x Illumina data, and 126x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained ... haplotig identification with Purge Haplotigs, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length417,601,740
Total ungapped length417,453,600
Gaps between scaffolds0
Number of scaffolds150
Scaffold N5020,558,067
Scaffold L509
Number of contigs621
Contig N501,383,654
Contig L5094
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)150

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902459464.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LR699092.1=NC_047062.10
Chromosome 2LR699093.1=NC_047063.10
Chromosome 3LR699094.1=NC_047064.10
Chromosome 4LR699095.1=NC_047065.10
Chromosome 5LR699096.1=NC_047066.10
Chromosome 6LR699097.1=NC_047067.10
Chromosome 7LR699098.1=NC_047068.10
Chromosome 8LR699099.1=NC_047069.11
Chromosome 9LR699100.1=NC_047070.10
Chromosome 10LR699101.1=NC_047071.10
Chromosome 11LR699102.1=NC_047072.10
Chromosome 12LR699103.1=NC_047073.10
Chromosome 13LR699104.1=NC_047074.10
Chromosome 14LR699105.1=NC_047075.10
Chromosome 15LR699106.1=NC_047076.10
Chromosome 16LR699107.1=NC_047077.10
Chromosome 17LR699108.1=NC_047078.10
Chromosome 18LR699109.1=NC_047079.10
Chromosome 19LR699110.1=NC_047080.10
Chromosome 20LR699111.1=NC_047081.10
Chromosome 21LR699112.1=NC_047082.10
Chromosome 22LR699113.1=NC_047083.10
unplacedn/an/an/a127

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule417,601,740150417,453,60020,558,0674710
Chromosome 1Assembled molecule33,825,921133,817,64033,825,921230
Chromosome 2Assembled molecule25,660,236125,652,88125,660,236330
Chromosome 3Assembled molecule22,888,987122,884,35522,888,987190
Chromosome 4Assembled molecule22,717,387122,712,60122,717,387200
Chromosome 5Assembled molecule22,602,731122,594,96622,602,731220
Chromosome 6Assembled molecule22,587,610122,579,41022,587,610260
Chromosome 7Assembled molecule21,886,259121,878,85921,886,259260
Chromosome 8AllAssembled moleculeUnlocalized scaffolds23,361,52121,693,5621,667,95921123,348,12121,681,2621,666,85921,693,56221,693,5621,667,95942393000
Chromosome 9Assembled molecule20,558,067120,549,78720,558,067230
Chromosome 10Assembled molecule20,453,796120,445,89620,453,796230
Chromosome 11Assembled molecule18,069,988118,062,18818,069,988220
Chromosome 12Assembled molecule17,180,802117,174,40217,180,802200
Chromosome 13Assembled molecule15,244,110115,241,11015,244,110140
Chromosome 14Assembled molecule14,674,731114,667,96314,674,731280
Chromosome 15Assembled molecule14,514,366114,511,66614,514,366110
Chromosome 16Assembled molecule14,301,440114,298,94014,301,440130
Chromosome 17Assembled molecule13,490,323113,480,62313,490,323250
Chromosome 18Assembled molecule12,862,124112,858,34512,862,124100
Chromosome 19Assembled molecule12,766,117112,763,11712,766,117100
Chromosome 20Assembled molecule12,664,855112,662,25512,664,855100
Chromosome 21Assembled molecule12,346,083112,341,08912,346,083140
Chromosome 22Assembled molecule10,582,139110,579,23910,582,13990
unplacedAssembled molecule12,362,14712712,348,147191,607280