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IDs: 7920831 [UID] 21712228 [GenBank] 32627778 [RefSeq]
The assembly mLutLut1.2 is based on 63x PacBio data, 58x 10X Genomics Chromium data, BioNano data and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly ... generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. more
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