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IP38594v1

Organism name:
Yersinia vastinensis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IP38594
BioSample:
SAMEA6448864
BioProject:
PRJEB36031
Submitter:
IP
Date:
2020/04/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_902726565.1 (latest)
RefSeq assembly accession:
GCF_902726565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CACVAF01
Genome coverage:
85x

IDs: 6931161 [UID] 19128148 [GenBank] 20097998 [RefSeq]

See Genome Information for Yersinia vastinensis

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,521,316
Total ungapped length4,521,316
Number of contigs45
Contig N50362,256
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,521,316454,521,316362,25600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia vastinensisYersinia vastinensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902170305.1Yersinia alsaticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.1283.4575.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected