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cgigas_uk_roslin_v1

Organism name:
Crassostrea gigas (Pacific oyster)
BioSample:
SAMEA6259236
BioProject:
PRJEB35351
Submitter:
THE ROSLIN INSTITUTE
Date:
2020/02/19
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902806645.1 (latest)
RefSeq assembly accession:
GCF_902806645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CADCXH01
Genome coverage:
70x

IDs: 6155571 [UID] 17498038 [GenBank] 19361738 [RefSeq]

See Genome Information for Crassostrea gigas

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length647,887,097
Total ungapped length647,867,330
Gaps between scaffolds0
Number of scaffolds236
Scaffold N5058,462,999
Scaffold L505
Number of contigs783
Contig N501,564,469
Contig L50116
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)236

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902806644.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1LR761634.1=NC_047559.10
Linkage Group LG2LR761635.1=NC_047560.10
Linkage Group LG3LR761636.1=NC_047561.10
Linkage Group LG4LR761637.1=NC_047562.10
Linkage Group LG5LR761638.1=NC_047563.10
Linkage Group LG6LR761639.1=NC_047564.10
Linkage Group LG7LR761640.1=NC_047565.10
Linkage Group LG8LR761641.1=NC_047566.10
Linkage Group LG9LR761642.1=NC_047567.10
Linkage Group LG10LR761643.1=NC_047568.10
unplacedn/an/an/a226

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All647,887,097236647,867,33058,462,9995470
Linkage Group LG155,785,328155,783,78555,785,328500
Linkage Group LG273,222,313173,219,40973,222,313850
Linkage Group LG358,319,100158,317,11558,319,100510
Linkage Group LG453,127,865153,126,07753,127,865430
Linkage Group LG573,550,375173,547,80673,550,375790
Linkage Group LG660,151,564160,149,62460,151,564540
Linkage Group LG762,107,823162,105,72662,107,823520
Linkage Group LG858,462,999158,461,55558,462,999510
Linkage Group LG937,089,910137,088,78337,089,910310
Linkage Group LG1057,541,580157,540,41657,541,580360
unplaced58,528,24022658,527,034476,514150