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IDs: 6932051 [UID] 19129508 [GenBank] 19360538 [RefSeq]
The assembly fPseGeo1.1 is based on 93x PacBio data, 56x 10X Genomics Chromium data, and 41x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with ... Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL, and further retained haplotigs were identified using purge_dups. Chromosome-scale scaffolds are named by synteny to medaka. more
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