U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



fGymAcu1.1

Organism name:
Gymnodraco acuticeps (bony fishes)
BioSample:
SAMEA104242997
BioProject:
PRJEB37639
Submitter:
SC
Date:
2020/04/15
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902827175.1 (latest)
RefSeq assembly accession:
GCF_902827175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CADEHN01
Genome coverage:
42x
Linked assembly:
GCA_902827185.1 (alternate pseudohaplotype of diploid)

IDs: 6931731 [UID] 19128988 [GenBank] 19360578 [RefSeq]

See Genome Information for Gymnodraco acuticeps

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The assembly fGymAcu1.1 is based on 42x PacBio data and 41x 10X Genomics Chromium data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification ... with Purge Haplotigs, 10X based scaffolding with scaff10x, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL, and further retained haplotigs were identified using purge_dups.  more

Global statistics

Total sequence length996,888,495
Total ungapped length996,695,919
Gaps between scaffolds0
Number of scaffolds2,618
Scaffold N501,921,211
Scaffold L50132
Number of contigs4,183
Contig N50534,678
Contig L50503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2,618

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced996,888,4952,618996,695,9191,921,2111,5650