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IDs: 7946661 [UID] 21789338 [GenBank] 22166688 [RefSeq]
The assembly mOncTor1.1 is based on 59x PacBio data, 77x 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon and ... an separate initial assembly with miniasm, scaffolding of the Falcon contigs using the miniasm assembly as a guide with cross_genome, scaffolding with scaff10x, contig breaking with break10x, gap filling with PBJelly, polishing using Arrow, polishing using Illumina data with Freebayes, and manual curation, including use of synteny with assembly GCA_003704035.1 of Peromyscus maniculatus bairdii. Chromosome-scale scaffolds are based on chromosome painting with Mus musculus fosmids. Autosomes are named in order of longer arm length. more
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