Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ilColCroc2.1

Organism name:

Colias croceus (clouded yellow)

BioSample:

SAMEA7523360

BioProject:

PRJEB42878

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2021/02/16

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_905220415.1 (latest)

RefSeq assembly accession:

GCF_905220415.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

Genome coverage:

68x

Linked assembly:

GCA_905220445.1 (alternate pseudohaplotype of diploid)

IDs: 9297751 [UID] 25031828 [GenBank] 30721318 [RefSeq]

See Genome Information for Colias croceus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_905220415.1	≠	GCF_905220415.1	ilColCroc2.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Name::Colias croceus Annotation Release 100
Annotation Version::100
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::9.0
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	324,897,031
Total ungapped length	324,893,731
Gaps between scaffolds	0
Number of scaffolds	32
Scaffold N50	11,204,669
Scaffold L50	13
Number of contigs	41
Contig N50	10,749,422
Contig L50	14
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	32

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	HG991959.1	=	NC_059537.1
Chromosome 2	HG991960.1	=	NC_059538.1
Chromosome 3	HG991961.1	=	NC_059539.1
Chromosome 4	HG991962.1	=	NC_059540.1
Chromosome 5	HG991963.1	=	NC_059541.1
Chromosome 6	HG991964.1	=	NC_059542.1
Chromosome 7	HG991965.1	=	NC_059543.1
Chromosome 8	HG991966.1	=	NC_059544.1
Chromosome 9	HG991967.1	=	NC_059545.1
Chromosome 10	HG991968.1	=	NC_059546.1
Chromosome 11	HG991969.1	=	NC_059547.1
Chromosome 12	HG991970.1	=	NC_059548.1
Chromosome 13	HG991971.1	=	NC_059549.1
Chromosome 14	HG991972.1	=	NC_059550.1
Chromosome 15	HG991973.1	=	NC_059551.1
Chromosome 16	HG991974.1	=	NC_059552.1
Chromosome 17	HG991975.1	=	NC_059553.1
Chromosome 18	HG991976.1	=	NC_059554.1
Chromosome 19	HG991977.1	=	NC_059555.1
Chromosome 20	HG991978.1	=	NC_059556.1
Chromosome 21	HG991979.1	=	NC_059557.1
Chromosome 22	HG991980.1	=	NC_059558.1
Chromosome 23	HG991981.1	=	NC_059559.1
Chromosome 24	HG991982.1	=	NC_059560.1
Chromosome 25	HG991983.1	=	NC_059561.1
Chromosome 26	HG991984.1	=	NC_059562.1
Chromosome 27	HG991985.1	=	NC_059563.1
Chromosome 28	HG991986.1	=	NC_059564.1
Chromosome 29	HG991987.1	=	NC_059565.1
Chromosome 30	HG991988.1	=	NC_059566.1
Chromosome W	HG991989.1	=	NC_059567.1
Chromosome Z	HG991958.1	=	NC_059568.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	324,897,031	32	324,893,731	11,204,669	9
Chromosome 1	15,086,434	1	15,084,834	15,086,434	5
Chromosome 2	13,248,411	1	13,248,411	13,248,411	0
Chromosome 3	13,170,806	1	13,170,806	13,170,806	0
Chromosome 4	12,846,590	1	12,846,590	12,846,590	0
Chromosome 5	12,694,599	1	12,694,599	12,694,599	0
Chromosome 6	12,659,109	1	12,659,109	12,659,109	0
Chromosome 7	12,035,604	1	12,035,604	12,035,604	0
Chromosome 8	11,651,232	1	11,651,232	11,651,232	0
Chromosome 9	11,343,046	1	11,343,046	11,343,046	0
Chromosome 10	11,322,328	1	11,322,328	11,322,328	0
Chromosome 11	11,312,006	1	11,312,006	11,312,006	0
Chromosome 12	11,204,669	1	11,204,669	11,204,669	0
Chromosome 13	11,134,396	1	11,134,396	11,134,396	0
Chromosome 14	10,749,422	1	10,749,422	10,749,422	0
Chromosome 15	10,729,550	1	10,729,550	10,729,550	0
Chromosome 16	10,690,504	1	10,690,504	10,690,504	0
Chromosome 17	10,658,465	1	10,658,465	10,658,465	0
Chromosome 18	10,163,686	1	10,163,686	10,163,686	0
Chromosome 19	9,829,487	1	9,829,487	9,829,487	0
Chromosome 20	9,695,912	1	9,695,912	9,695,912	0
Chromosome 21	9,583,924	1	9,583,924	9,583,924	0
Chromosome 22	8,788,975	1	8,788,975	8,788,975	0
Chromosome 23	8,060,085	1	8,059,585	8,060,085	1
Chromosome 24	7,974,140	1	7,974,140	7,974,140	0
Chromosome 25	7,884,208	1	7,884,208	7,884,208	0
Chromosome 26	7,474,634	1	7,474,634	7,474,634	0
Chromosome 27	7,267,790	1	7,267,790	7,267,790	0
Chromosome 28	5,875,496	1	5,875,496	5,875,496	0
Chromosome 29	5,281,208	1	5,281,208	5,281,208	0
Chromosome 30	5,078,220	1	5,078,220	5,078,220	0
Chromosome W	2,164,988	1	2,163,788	2,164,988	3
Chromosome Z	17,237,107	1	17,237,107	17,237,107	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

ilColCroc2.1

See Genome Information for Colias croceus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics