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Source database (GenBank or RefSeq) File type

ilMelCinx1.1

Organism name:

Melitaea cinxia (Glanville fritillary)

BioSample:

SAMEA7523475

BioProject:

PRJEB42891

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2021/02/16

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_905220565.1 (latest)

RefSeq assembly accession:

GCF_905220565.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

Genome coverage:

28x

Linked assembly:

GCA_905220555.1 (alternate pseudohaplotype of diploid)

IDs: 9297801 [UID] 25031898 [GenBank] 30575518 [RefSeq]

See Genome Information for Melitaea cinxia

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_905220565.1	≠	GCF_905220565.1	ilMelCinx1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Name::Melitaea cinxia Annotation Release 100
Annotation Version::100
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::9.0
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	499,397,863
Total ungapped length	499,372,863
Gaps between scaffolds	0
Number of scaffolds	31
Scaffold N50	17,325,599
Scaffold L50	13
Number of contigs	111
Contig N50	7,977,876
Contig L50	20
Total number of chromosomes and plasmids	31
Number of component sequences (WGS or clone)	31

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	HG992210.1	=	NC_059394.1
Chromosome 2	HG992211.1	=	NC_059395.1
Chromosome 3	HG992212.1	=	NC_059396.1
Chromosome 4	HG992213.1	=	NC_059397.1
Chromosome 5	HG992214.1	=	NC_059398.1
Chromosome 6	HG992215.1	=	NC_059399.1
Chromosome 7	HG992216.1	=	NC_059400.1
Chromosome 8	HG992217.1	=	NC_059401.1
Chromosome 9	HG992218.1	=	NC_059402.1
Chromosome 10	HG992219.1	=	NC_059403.1
Chromosome 11	HG992220.1	=	NC_059404.1
Chromosome 12	HG992221.1	=	NC_059405.1
Chromosome 13	HG992222.1	=	NC_059406.1
Chromosome 14	HG992223.1	=	NC_059407.1
Chromosome 15	HG992224.1	=	NC_059408.1
Chromosome 16	HG992225.1	=	NC_059409.1
Chromosome 17	HG992226.1	=	NC_059410.1
Chromosome 18	HG992227.1	=	NC_059411.1
Chromosome 19	HG992228.1	=	NC_059412.1
Chromosome 20	HG992229.1	=	NC_059413.1
Chromosome 21	HG992230.1	=	NC_059414.1
Chromosome 22	HG992231.1	=	NC_059415.1
Chromosome 23	HG992232.1	=	NC_059416.1
Chromosome 24	HG992233.1	=	NC_059417.1
Chromosome 25	HG992234.1	=	NC_059418.1
Chromosome 26	HG992235.1	=	NC_059419.1
Chromosome 27	HG992236.1	=	NC_059420.1
Chromosome 28	HG992237.1	=	NC_059421.1
Chromosome 29	HG992238.1	=	NC_059422.1
Chromosome 30	HG992239.1	=	NC_059423.1
Chromosome Z	HG992209.1	=	NC_059424.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	499,397,863	31	499,372,863	17,325,599	80
Chromosome 1	20,845,131	1	20,844,931	20,845,131	1
Chromosome 2	20,733,919	1	20,733,119	20,733,919	4
Chromosome 3	20,523,172	1	20,521,472	20,523,172	7
Chromosome 4	19,963,009	1	19,963,009	19,963,009	0
Chromosome 5	19,005,330	1	19,004,430	19,005,330	3
Chromosome 6	18,766,872	1	18,766,872	18,766,872	0
Chromosome 7	18,405,501	1	18,404,601	18,405,501	3
Chromosome 8	17,992,362	1	17,991,962	17,992,362	2
Chromosome 9	17,917,854	1	17,917,154	17,917,854	2
Chromosome 10	17,882,340	1	17,881,440	17,882,340	3
Chromosome 11	17,725,505	1	17,724,005	17,725,505	3
Chromosome 12	17,325,599	1	17,324,599	17,325,599	5
Chromosome 13	17,298,124	1	17,297,024	17,298,124	4
Chromosome 14	17,103,128	1	17,102,728	17,103,128	2
Chromosome 15	17,029,419	1	17,028,919	17,029,419	1
Chromosome 16	16,952,952	1	16,952,452	16,952,952	1
Chromosome 17	16,663,710	1	16,662,510	16,663,710	3
Chromosome 18	16,149,269	1	16,147,769	16,149,269	3
Chromosome 19	15,579,111	1	15,578,111	15,579,111	2
Chromosome 20	14,993,160	1	14,992,660	14,993,160	1
Chromosome 21	14,420,754	1	14,419,354	14,420,754	4
Chromosome 22	13,787,452	1	13,786,952	13,787,452	1
Chromosome 23	12,931,989	1	12,931,389	12,931,989	3
Chromosome 24	12,541,244	1	12,540,344	12,541,244	3
Chromosome 25	12,171,498	1	12,170,398	12,171,498	4
Chromosome 26	11,877,593	1	11,876,193	11,877,593	4
Chromosome 27	11,310,314	1	11,309,114	11,310,314	3
Chromosome 28	10,934,625	1	10,934,125	10,934,625	1
Chromosome 29	9,046,477	1	9,045,877	9,046,477	3
Chromosome 30	8,852,510	1	8,851,410	8,852,510	4
Chromosome Z	22,667,940	1	22,667,940	22,667,940	0

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ilMelCinx1.1

See Genome Information for Melitaea cinxia

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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