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ilPieNapi1.2

Organism name:
Pieris napi (butterflies)
BioSample:
SAMEA7523287
BioProject:
PRJEB44052
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/01/30
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_905475465.2 (latest)
RefSeq assembly accession:
GCF_905475465.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CAJQFT02
Genome coverage:
60x

IDs: 11961081 [UID] 31423548 [GenBank] 32607438 [RefSeq]

See Genome Information for Pieris napi

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

The assembly ilPieNapi1.2 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length319,186,907
Total ungapped length319,182,007
Gaps between scaffolds0
Number of scaffolds42
Scaffold N5013,068,865
Scaffold L5012
Number of contigs83
Contig N508,327,096
Contig L5014
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)42

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_905475464.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1FR997694.1=NC_062234.10
Chromosome 2FR997695.1=NC_062235.10
Chromosome 3FR997697.1=NC_062236.10
Chromosome 4FR997698.1=NC_062237.10
Chromosome 5FR997699.1=NC_062238.10
Chromosome 6FR997700.1=NC_062239.10
Chromosome 7FR997701.1=NC_062240.10
Chromosome 8FR997702.1=NC_062241.10
Chromosome 9FR997703.1=NC_062242.10
Chromosome 10FR997704.1=NC_062243.10
Chromosome 11FR997705.1=NC_062244.10
Chromosome 12FR997706.1=NC_062245.10
Chromosome 13FR997707.1=NC_062246.10
Chromosome 14FR997708.1=NC_062247.10
Chromosome 15FR997709.1=NC_062248.10
Chromosome 16FR997710.1=NC_062249.10
Chromosome 17FR997711.1=NC_062250.10
Chromosome 18FR997712.1=NC_062251.10
Chromosome 19FR997713.1=NC_062252.10
Chromosome 20FR997714.1=NC_062253.10
Chromosome 21FR997715.1=NC_062254.10
Chromosome 22FR997716.1=NC_062255.10
Chromosome 23FR997717.1=NC_062256.10
Chromosome 24FR997718.1=NC_062257.10
Chromosome WFR997719.1=NC_062258.14
Chromosome ZFR997696.1=NC_062259.10
unplacedn/an/an/a12

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule319,186,90742319,182,00713,068,865410
Chromosome 1Assembled molecule14,821,532114,821,53214,821,53200
Chromosome 2Assembled molecule14,218,065114,218,06514,218,06500
Chromosome 3Assembled molecule13,690,485113,689,88513,690,48560
Chromosome 4Assembled molecule13,663,050113,663,05013,663,05000
Chromosome 5Assembled molecule13,535,449113,534,64913,535,44940
Chromosome 6Assembled molecule13,457,165113,457,16513,457,16500
Chromosome 7Assembled molecule13,402,660113,402,06013,402,66060
Chromosome 8Assembled molecule13,342,895113,342,89513,342,89500
Chromosome 9Assembled molecule13,285,800113,285,80013,285,80000
Chromosome 10Assembled molecule13,261,761113,261,66113,261,76110
Chromosome 11Assembled molecule13,068,865113,068,86513,068,86500
Chromosome 12Assembled molecule12,994,351112,994,35112,994,35100
Chromosome 13Assembled molecule12,729,147112,728,94712,729,14720
Chromosome 14Assembled molecule12,714,202112,714,10212,714,20210
Chromosome 15Assembled molecule12,553,434112,553,23412,553,43420
Chromosome 16Assembled molecule12,519,783112,519,68312,519,78310
Chromosome 17Assembled molecule12,198,241112,198,04112,198,24120
Chromosome 18Assembled molecule12,115,890112,115,29012,115,89060
Chromosome 19Assembled molecule11,730,311111,730,21111,730,31110
Chromosome 20Assembled molecule11,516,011111,515,91111,516,01110
Chromosome 21Assembled molecule11,475,687111,475,58711,475,68710
Chromosome 22Assembled molecule10,703,985110,703,78510,703,98520
Chromosome 23Assembled molecule10,191,035110,190,53510,191,03510
Chromosome 24Assembled molecule7,388,05717,387,6577,388,05740
Chromosome WAllAssembled moleculeUnlocalized scaffolds4,297,5792,677,5231,620,0565144,297,5792,677,5231,620,0562,677,5232,677,5231,147,444000000
Chromosome ZAssembled molecule13,945,720113,945,72013,945,72000
unplacedAssembled molecule365,74712365,74736,93600