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PGI_DIABVI_V3a

Organism name:: Diabrotica virgifera virgifera (western corn rootworm)
BioSample:: SAMEA10259683
BioProject:: PRJEB47906
Submitter:: ROTHAMSTED RESEARCH
Date:: 2022/07/29
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_917563875.2 (latest)
RefSeq assembly accession:: GCF_917563875.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 40x

IDs: 13424831 [UID] 35031348 [GenBank] 35083048 [RefSeq]

See Genome Information for Diabrotica virgifera

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_917563875.2	=	GCF_917563875.1	PGI_DIABVI_V3a	Chromosome	Latest GenBank, Latest RefSeq
GCA_917563875.1	n/a	n/a	PGI_DIABVI_V1	Chromosome	Replaced GenBank

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Full annotation
Annotation Name::Diabrotica virgifera virgifera Annotation Release 101
Annotation Version::101
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.0
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,533,404,242
Total ungapped length	2,533,094,815
Gaps between scaffolds	0
Number of scaffolds	10
Scaffold N50	264,456,228
Scaffold L50	5
Number of contigs	629
Contig N50	7,930,419
Contig L50	100
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	10

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	OU830624.1	=	NC_065443.1
Chromosome 2	OU830625.2	=	NC_065444.1
Chromosome 3	OU830626.1	=	NC_065445.1
Chromosome 4	OU830627.1	=	NC_065446.1
Chromosome 5	OU830628.1	=	NC_065447.1
Chromosome 6	OU830629.1	=	NC_065448.1
Chromosome 7	OU830630.1	=	NC_065449.1
Chromosome 8	OU830631.1	=	NC_065450.1
Chromosome 9	OU830632.2	=	NC_065451.1
Chromosome 10	OU830633.1	=	NC_065452.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,533,404,242	10	2,533,094,815	264,456,228	619
Chromosome 1	319,032,388	1	318,997,388	319,032,388	70
Chromosome 2	282,837,000	1	282,804,000	282,837,000	66
Chromosome 3	278,321,370	1	278,285,370	278,321,370	72
Chromosome 4	265,031,889	1	265,001,889	265,031,889	60
Chromosome 5	264,456,228	1	264,420,228	264,456,228	72
Chromosome 6	255,727,343	1	255,694,843	255,727,343	65
Chromosome 7	255,305,493	1	255,282,493	255,305,493	46
Chromosome 8	230,784,347	1	230,751,347	230,784,347	66
Chromosome 9	226,018,419	1	225,991,992	226,018,419	53
Chromosome 10	155,889,765	1	155,865,265	155,889,765	49

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PGI_DIABVI_V3a

See Genome Information for Diabrotica virgifera

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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