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Source database (GenBank or RefSeq) File type

ilPluXylo3.1

Organism name:

Plutella xylostella (diamondback moth)

BioSample:

SAMEA7520369

BioProject:

PRJEB51184

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2022/03/10

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_932276165.1 (latest)

RefSeq assembly accession:

GCF_932276165.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

CAKNZZ01

Genome coverage:

77x

Linked assembly:

GCA_932276175.1 (alternate pseudohaplotype of diploid)

IDs: 12312921 [UID] 32252458 [GenBank] 33738088 [RefSeq]

See Genome Information for Plutella xylostella

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_932276165.1	≠	GCF_932276165.1	ilPluXylo3.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly ilPluXylo3.1 is based on 77x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny based on Plutella xylostella (diamondback moth) GCA_019096205.1.  more

Global statistics

Total sequence length	323,302,761
Total ungapped length	323,300,961
Gaps between scaffolds	0
Number of scaffolds	33
Scaffold N50	11,339,310
Scaffold L50	13
Number of contigs	39
Contig N50	10,961,940
Contig L50	14
Total number of chromosomes and plasmids	31
Number of component sequences (WGS or clone)	33

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 2	OW026580.1	=	NC_063982.1	0
Chromosome 3	OW026569.1	=	NC_063983.1	0
Chromosome 4	OW026557.1	=	NC_063984.1	0
Chromosome 5	OW026554.1	=	NC_063985.1	0
Chromosome 6	OW026560.1	=	NC_063986.1	0
Chromosome 7	OW026571.1	=	NC_063987.1	0
Chromosome 8	OW026565.1	=	NC_063988.1	0
Chromosome 9	OW026558.1	=	NC_063989.1	0
Chromosome 10	OW026559.1	=	NC_063990.1	0
Chromosome 11	OW026583.1	=	NC_063991.1	0
Chromosome 12	OW026561.1	=	NC_063992.1	0
Chromosome 13	OW026562.1	=	NC_063993.1	0
Chromosome 14	OW026567.1	=	NC_063994.1	0
Chromosome 15	OW026555.1	=	NC_063995.1	0
Chromosome 16	OW026574.1	=	NC_063996.1	0
Chromosome 17	OW026572.1	=	NC_063997.1	0
Chromosome 18	OW026566.1	=	NC_063998.1	0
Chromosome 19	OW026570.1	=	NC_063999.1	0
Chromosome 20	OW026575.1	=	NC_064000.1	0
Chromosome 21	OW026568.1	=	NC_064001.1	0
Chromosome 22	OW026556.1	=	NC_064002.1	0
Chromosome 23	OW026563.1	=	NC_064003.1	0
Chromosome 24	OW026582.1	=	NC_064004.1	0
Chromosome 25	OW026573.1	=	NC_064005.1	0
Chromosome 26	OW026577.1	=	NC_064006.1	0
Chromosome 27	OW026578.1	=	NC_064007.1	0
Chromosome 28	OW026576.1	=	NC_064008.1	0
Chromosome 29	OW026564.1	=	NC_064009.1	0
Chromosome 30	OW026581.1	=	NC_064010.1	0
Chromosome 31	OW026579.1	=	NC_064011.1	0
Chromosome Z	OW026553.1	=	NC_064012.1	0
unplaced	n/a	n/a	n/a	2

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	323,302,761	33	323,300,961	11,339,310	6
Chromosome 2	6,019,732	1	6,019,732	6,019,732	0
Chromosome 3	10,808,545	1	10,808,545	10,808,545	0
Chromosome 4	12,543,683	1	12,543,683	12,543,683	0
Chromosome 5	13,320,900	1	13,320,900	13,320,900	0
Chromosome 6	12,230,658	1	12,230,658	12,230,658	0
Chromosome 7	10,125,468	1	10,125,468	10,125,468	0
Chromosome 8	11,120,585	1	11,120,585	11,120,585	0
Chromosome 9	12,341,994	1	12,341,994	12,341,994	0
Chromosome 10	12,284,083	1	12,284,083	12,284,083	0
Chromosome 11	5,531,438	1	5,531,438	5,531,438	0
Chromosome 12	11,898,994	1	11,898,994	11,898,994	0
Chromosome 13	11,823,970	1	11,823,970	11,823,970	0
Chromosome 14	11,003,345	1	11,003,345	11,003,345	0
Chromosome 15	12,292,683	1	12,292,483	12,292,683	1
Chromosome 16	9,353,944	1	9,353,944	9,353,944	0
Chromosome 17	11,824,421	1	11,824,021	11,824,421	2
Chromosome 18	11,050,649	1	11,050,649	11,050,649	0
Chromosome 19	10,601,444	1	10,601,444	10,601,444	0
Chromosome 20	9,166,468	1	9,166,468	9,166,468	0
Chromosome 21	10,961,940	1	10,961,940	10,961,940	0
Chromosome 22	12,604,594	1	12,604,094	12,604,594	1
Chromosome 23	11,654,879	1	11,654,879	11,654,879	0
Chromosome 24	5,754,815	1	5,754,815	5,754,815	0
Chromosome 25	9,983,008	1	9,983,008	9,983,008	0
Chromosome 26	8,635,333	1	8,635,333	8,635,333	0
Chromosome 27	9,082,186	1	9,081,986	9,082,186	1
Chromosome 28	9,102,773	1	9,102,773	9,102,773	0
Chromosome 29	11,339,310	1	11,339,310	11,339,310	0
Chromosome 30	5,994,776	1	5,994,776	5,994,776	0
Chromosome 31	6,621,544	1	6,621,544	6,621,544	0
Chromosome Z	16,174,618	1	16,174,618	16,174,618	0
unplaced	49,981	2	49,481	33,758	1

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ilPluXylo3.1

See Genome Information for Plutella xylostella

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

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