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idAnoCruzAS_RS32_06

Organism name:
Anopheles cruzii (mosquito)
BioSample:
SAMEA12928215
BioProject:
PRJEB53269
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/06/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_943734635.1 (latest)
RefSeq assembly accession:
GCF_943734635.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CALSDP01
Genome coverage:
103x

IDs: 13067221 [UID] 34135838 [GenBank] 39302968 [RefSeq]

See Genome Information for Anopheles cruzii

History (Show revision history)

Comment

The assembly idAnoCruzAS_RS32_06 is based on 103x 10X Genomics Chromium data, Arima Hi-C data, and low coverage PacBio HiFi data generated by the Anopheles Reference Genomes project. The assembly process included the following sequence of steps: initial 10x assembly ... generation with supernova, Hi-C based scaffolding with SALSA2, and PacBio scaffolding with LR_Gapcloser. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named, ordered and oriented based on published data.  more

Global statistics

Total sequence length184,084,636
Total ungapped length182,984,500
Gaps between scaffolds0
Number of scaffolds5,089
Scaffold N5062,075,725
Scaffold L502
Number of contigs6,609
Contig N50336,149
Contig L50141
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)5,089

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_943734634.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XOX030881.1=NC_069143.10
Chromosome 2OX030879.1=NC_069144.10
Chromosome 3OX030880.1=NC_069145.10
unplacedn/an/an/a5,085

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All184,069,3495,088182,969,21362,075,7251,5200
Chromosome X12,170,496112,065,98812,170,4961640
Chromosome 262,075,725161,777,73562,075,7253970
Chromosome 387,567,467186,987,05387,567,4675630
unplaced22,255,6615,08522,138,4376,4053960
MoleculeTotal
Length
Mitochondrion MT15,287