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ilBicAnyn1.1

Organism name:
Bicyclus anynana (squinting bush brown)
BioSample:
SAMEA9252597
BioProject:
PRJEB56893
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/10/28
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_947172395.1 (latest)
RefSeq assembly accession:
GCF_947172395.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CAMWEB01
Assembly method:
various
Genome coverage:
20x
Sequencing technology:
PacBio,Arima2
Linked assembly:
GCA_947172465.1 (alternate pseudohaplotype of diploid)

IDs: 14250851 [UID] 37021228 [GenBank] 38765108 [RefSeq]

See Genome Information for Bicyclus anynana

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The assembly ilBicAnyn1.1 is based on 20x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length457,159,770
Total ungapped length457,022,170
Gaps between scaffolds0
Number of scaffolds82
Scaffold N5017,439,807
Scaffold L5013
Number of contigs769
Contig N501,166,575
Contig L50117
Total number of chromosomes and plasmids28
Number of component sequences (WGS or clone)82

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_947172394.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OX359205.1=NC_069083.10
Chromosome 2OX359206.1=NC_069084.10
Chromosome 3OX359207.1=NC_069085.10
Chromosome 4OX359208.1=NC_069086.10
Chromosome 5OX359209.1=NC_069087.10
Chromosome 6OX359210.1=NC_069088.10
Chromosome 7OX359211.1=NC_069089.10
Chromosome 8OX359212.1=NC_069090.10
Chromosome 9OX359213.1=NC_069091.11
Chromosome 10OX359214.1=NC_069092.10
Chromosome 11OX359215.1=NC_069093.10
Chromosome 12OX359216.1=NC_069094.10
Chromosome 13OX359217.1=NC_069095.10
Chromosome 14OX359218.1=NC_069096.10
Chromosome 15OX359219.1=NC_069097.10
Chromosome 16OX359220.1=NC_069098.10
Chromosome 17OX359221.1=NC_069099.10
Chromosome 18OX359222.1=NC_069100.10
Chromosome 19OX359223.1=NC_069101.10
Chromosome 20OX359224.1=NC_069102.10
Chromosome 21OX359225.1=NC_069103.10
Chromosome 22OX359226.1=NC_069104.10
Chromosome 23OX359227.1=NC_069105.10
Chromosome 24OX359228.1=NC_069106.10
Chromosome 25OX359229.1=NC_069107.10
Chromosome 26OX359230.1=NC_069108.11
Chromosome 27OX359231.1=NC_069109.11
Chromosome ZOX359204.1=NC_069110.11
unplacedn/an/an/a50

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule457,159,77082457,022,17017,439,8076870
Chromosome 1Assembled molecule19,874,778119,869,37819,874,778270
Chromosome 2Assembled molecule19,554,336119,547,93619,554,336320
Chromosome 3Assembled molecule19,462,324119,456,32419,462,324300
Chromosome 4Assembled molecule19,227,976119,222,77619,227,976250
Chromosome 5Assembled molecule19,123,075119,118,07519,123,075250
Chromosome 6Assembled molecule18,699,977118,695,77718,699,977210
Chromosome 7Assembled molecule18,686,866118,682,06618,686,866240
Chromosome 8Assembled molecule17,880,892117,875,49217,880,892270
Chromosome 9AllAssembled moleculeUnlocalized scaffolds17,600,62617,573,95126,67521117,595,62617,568,95126,67517,573,95117,573,95126,67525250000
Chromosome 10Assembled molecule17,511,070117,508,47017,511,070130
Chromosome 11Assembled molecule17,486,486117,482,68617,486,486190
Chromosome 12Assembled molecule17,439,807117,433,20717,439,807330
Chromosome 13Assembled molecule17,106,946117,103,54617,106,946170
Chromosome 14Assembled molecule16,977,557116,972,35716,977,557260
Chromosome 15Assembled molecule16,484,161116,480,56116,484,161180
Chromosome 16Assembled molecule16,150,062116,145,26216,150,062240
Chromosome 17Assembled molecule15,962,424115,958,62415,962,424190
Chromosome 18Assembled molecule15,776,552115,771,95215,776,552230
Chromosome 19Assembled molecule15,486,372115,482,77215,486,372180
Chromosome 20Assembled molecule15,164,473115,162,27315,164,473110
Chromosome 21Assembled molecule14,960,064114,956,66414,960,064170
Chromosome 22Assembled molecule13,700,980113,698,58013,700,980120
Chromosome 23Assembled molecule13,224,086113,218,88613,224,086260
Chromosome 24Assembled molecule11,078,121111,074,72111,078,121170
Chromosome 25Assembled molecule10,936,427110,933,82710,936,427130
Chromosome 26AllAssembled moleculeUnlocalized scaffolds10,137,50910,067,17470,33521110,133,30910,062,97470,33510,067,17410,067,17470,33521210000
Chromosome 27AllAssembled moleculeUnlocalized scaffolds7,627,2577,596,63030,6272117,624,0577,593,43030,6277,596,6307,596,63030,62716160000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds21,636,07521,498,244137,83121121,614,47521,476,644137,83121,498,24421,498,244137,8311081080000
unplacedAssembled molecule2,202,491502,202,491114,11600