Genome assembly ASM3037200v1

FTP
Actions
NCBI RefSeq assembly
GCF_030372005.1
Submitted GenBank assembly
GCA_030372005.1
Taxon
Enorma phocaeensis
Strain
154_Feed
WGS project
JAUDDZ01
Submitter
Veterinary Research Institute
Date
Jun 28, 2023

Assembly statistics

RefSeqGenBank
Genome size2.3 Mb2.3 Mb
Total ungapped length2.3 Mb2.3 Mb
Number of contigs3737
Contig N50160.2 kb160.2 kb
Contig L5055
GC percent63.563.5
Genome coverage228.0x228.0x
Assembly levelContigContig
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN34359394
Description
MIGS Cultured Bacterial/Archaeal sample from Enorma phocaeensis
Comment
Keywords: GSC:MIxS;MIGS:6.0
Submitter
Veterinary Research Institute
Strain
154_Feed
Collection date
2020
Broad-scale environmental context
not applicable
Local-scale environmental context
not applicable
Environmental medium
not applicable
Geographic location
not applicable
Host
Gallus gallus
Latitude and longitude
not applicable
Biological status
natural
Observed biotic relationship
commensal
Host disease
healthy
Isolation source
caecum
Oxygenation status of sample
anaerobic
Description2
Enorma_phocaeensis_154_Feed
Sample name
Enorma phocaeensis 154_Feed
SRA
SRS18017460
Models
MIGS.ba, MIGS/MIMS/MIMARKS.host-associated
Package
MIGS.ba.host-associated.6.0
Submission date
2023-04-25T06:32:08.217
Publication date
2023-04-25T00:00:00.000
Last updated
2023-06-20T13:54:01.030

Assembly methods

Sequencing technology
Illumina NextSeq
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
SPAdes v. 3.11

BioProject

PRJNA377666

Whole genome sequencing of chicken gut anaerobes

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_030372005.1-RS_2024_07_08NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateJul 8, 2024Jun 23, 2023
Genes2,0452,028
Protein-coding1,9631,956
Software version6.76.5

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.3)

Completeness: 99.03% (50th Percentile)

Contamination: 0%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Coriobacteriaceae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
below_threshold_mismatch
Submitted organism name
Enorma phocaeensis
Submitted species name
Enorma phocaeensis

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_900186505.1GCA_902150035.1
Organism nameEnorma phocaeensisEnorma burkinafasonensis
Type categorysuspected_typetype
ANI84.84%85.02%
Assembly coverage13.18%19.42%
Type assembly coverage12.95%20.27%

Chromosomes

Note: This contig-level genome assembly includes 37 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_030372005.1GCF_030372005.1ASM3037200v1ContigJun 28, 2023