Genome assembly ASM3037200v1
- NCBI RefSeq assembly
- GCF_030372005.1
- Submitted GenBank assembly
- GCA_030372005.1
- Taxon
- Enorma phocaeensis
- Strain
- 154_Feed
- WGS project
- JAUDDZ01
- Submitter
- Veterinary Research Institute
- Date
- Jun 28, 2023
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 2.3 Mb | 2.3 Mb |
Total ungapped length | 2.3 Mb | 2.3 Mb |
Number of contigs | 37 | 37 |
Contig N50 | 160.2 kb | 160.2 kb |
Contig L50 | 5 | 5 |
GC percent | 63.5 | 63.5 |
Genome coverage | 228.0x | 228.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN34359394
- Description
- MIGS Cultured Bacterial/Archaeal sample from Enorma phocaeensis
- Comment
- Keywords: GSC:MIxS;MIGS:6.0
- Submitter
- Veterinary Research Institute
- Strain
- 154_Feed
- Collection date
- 2020
- Broad-scale environmental context
- not applicable
- Local-scale environmental context
- not applicable
- Environmental medium
- not applicable
- Geographic location
- not applicable
- Host
- Gallus gallus
- Latitude and longitude
- not applicable
- Biological status
- natural
- Observed biotic relationship
- commensal
- Host disease
- healthy
- Isolation source
- caecum
- Oxygenation status of sample
- anaerobic
- Description2
- Enorma_phocaeensis_154_Feed
- Sample name
- Enorma phocaeensis 154_Feed
- SRA
- SRS18017460
- Models
- MIGS.ba, MIGS/MIMS/MIMARKS.host-associated
- Package
- MIGS.ba.host-associated.6.0
- Submission date
- 2023-04-25T06:32:08.217
- Publication date
- 2023-04-25T00:00:00.000
- Last updated
- 2023-06-20T13:54:01.030
Assembly methods
- Sequencing technology
- Illumina NextSeq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.11
Additional genomes
Browse all Enorma phocaeensis genomes (8)Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_030372005.1-RS_2024_07_08 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Jul 8, 2024 | Jun 23, 2023 |
Genes | 2,045 | 2,028 |
Protein-coding | 1,963 | 1,956 |
Software version | 6.7 | 6.5 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 99.03% (50th Percentile)
Contamination: 0%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Coriobacteriaceae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- below_threshold_mismatch
- Submitted organism name
- Enorma phocaeensis
- Submitted species name
- Enorma phocaeensis
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_900186505.1 | GCA_902150035.1 |
Organism name | Enorma phocaeensis | Enorma burkinafasonensis |
Type category | suspected_type | type |
ANI | 84.84% | 85.02% |
Assembly coverage | 13.18% | 19.42% |
Type assembly coverage | 12.95% | 20.27% |
Chromosomes
Note: This contig-level genome assembly includes 37 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_030372005.1 | GCF_030372005.1 | ASM3037200v1 | Contig | Jun 28, 2023 |