Genome assembly BIME_Iper_1.3
Actions
- Submitted GenBank assembly
- GCA_023395115.1
- Taxon
- Cyanobacteria bacterium OH_SFB_222
- Isolate
- OH_SFB_222
- WGS project
- JAEWZU01
- Assembly type
- haploid
- Submitter
- LNCC
- Date
- May 17, 2022
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 1.8 Mb |
Total ungapped length | 1.8 Mb |
Number of contigs | 278 |
Contig N50 | 7.6 kb |
Contig L50 | 76 |
GC percent | 33.5 |
Genome coverage | 28.0x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN17043913
- Description
- OH_swine_fortaleza_bin.222
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- National Laboratory of Scientific Computation
- Host
- Sus scrofa
- Isolation source
- feces
- Collection date
- Feb 1, 2020
- Geographic location
- Brazil: Fortaleza
- Latitude and longitude
- 3.71722 S 38.54306 W
- Isolate
- OH_SFB_222
- Broad-scale environmental context
- ENVO:00000428
- Local-scale environmental context
- ENVO:01001055
- Environmental medium
- ENVO_00002003
- Derived from
- This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN16988201
- Metagenomic
- TRUE
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- gut metagenome
- Sample name
- OH_swine_fortaleza_bin.222
- Models
- MIMAG.host-associated
- Package
- MIMAG.host-associated.6.0
- Submission date
- 2020-12-09T15:04:14.050
- Publication date
- 2022-01-01T00:55:20.327
- Last updated
- 2022-01-01T00:55:20.327
Assembly methods
- Sequencing technology
- Illumina HiSeq
- Assembly method
- MEGAHIT v. 1.2.9
Additional genomes
Browse all Ixodes persulcatus genomes (1)Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Cyanobacteria bacterium OH_SFB_222
- Submitted species name
- Cyanobacteria bacterium OH_SFB_222
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_000612845.1 |
Organism name | n/a | Clostridium ihumii |
Type category | n/a | type |
ANI | n/a | 79.51% |
Assembly coverage | n/a | 0.03% |
Type assembly coverage | n/a | 0.01% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
MT | CM023679.1 | n/a | 14,542 | 22.5 | 0 |
Note: This contig-level genome assembly includes 278 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_023392205.1 | n/a | ASM2339220v1 | Contig | May 17, 2022 |