Genome assembly BIME_Iper_1.3

FTP
Actions
Submitted GenBank assembly
GCA_023395115.1
Taxon
Cyanobacteria bacterium OH_SFB_222
Isolate
OH_SFB_222
WGS project
JAEWZU01
Assembly type
haploid
Submitter
LNCC
Date
May 17, 2022

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • genus undefined

Assembly statistics

GenBank
Genome size1.8 Mb
Total ungapped length1.8 Mb
Number of contigs278
Contig N507.6 kb
Contig L5076
GC percent33.5
Genome coverage28.0x
Assembly levelContig

Sample details

BioSample ID
SAMN17043913
Description
OH_swine_fortaleza_bin.222
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
National Laboratory of Scientific Computation
Host
Sus scrofa
Isolation source
feces
Collection date
Feb 1, 2020
Geographic location
Brazil: Fortaleza
Latitude and longitude
3.71722 S 38.54306 W
Isolate
OH_SFB_222
Broad-scale environmental context
ENVO:00000428
Local-scale environmental context
ENVO:01001055
Environmental medium
ENVO_00002003
Derived from
This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN16988201
Metagenomic
TRUE
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
gut metagenome
Sample name
OH_swine_fortaleza_bin.222
Models
MIMAG.host-associated
Package
MIMAG.host-associated.6.0
Submission date
2020-12-09T15:04:14.050
Publication date
2022-01-01T00:55:20.327
Last updated
2022-01-01T00:55:20.327

Assembly methods

Sequencing technology
Illumina HiSeq
Assembly method
MEGAHIT v. 1.2.9

BioProject

PRJNA682348

OneHealth host_associated metagenomes MAGs

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Cyanobacteria bacterium OH_SFB_222
Submitted species name
Cyanobacteria bacterium OH_SFB_222

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_000612845.1
Organism name

n/a

Clostridium ihumii
Type category

n/a

type
ANI

n/a

79.51%
Assembly coverage

n/a

0.03%
Type assembly coverage

n/a

0.01%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
MTCM023679.1

n/a

14,54222.50

Note: This contig-level genome assembly includes 278 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_023392205.1

n/a

ASM2339220v1ContigMay 17, 2022