ID 1008982 - BioProject

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Accession: PRJNA1008982 ID: 1008982

Genetic diversity and antimicrobial susceptibility of Streptococcus suis in diseased Swiss pigs

WGS of S. suis isolates collected from diseased pigs in Switzerland between 2019 and 2022

Accession	PRJNA1008982
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Published online: Scherrer S et al., "Genetic diversity and antimicrobial susceptibility of Streptococcus suis from diseased Swiss pigs collected between 2019 – 2022", Veterinary Microbiology, 2024;293
Submission	Registration date: 24-Aug-2023 University of Zurich
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	59
SRA Experiments	59
Other datasets
BioSample	59
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

59
59

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_036679985.1	JAVIID000000000	SAMN37141189	SS-5819	Streptococcus parasuis
GCA_036680365.1	JAVIHI000000000	SAMN37141168	SS-4456	Streptococcus sp. SS-4456
GCA_036680345.1	JAVIHJ000000000	SAMN37141169	SS-4991	Streptococcus suis
GCA_036680325.1	JAVIHK000000000	SAMN37141170	SS-5001	Streptococcus suis
GCA_036680295.1	JAVIHM000000000	SAMN37141172	SS-5098	Streptococcus suis
GCA_036680285.1	JAVIHL000000000	SAMN37141171	SS-5097	Streptococcus suis
GCA_036680265.1	JAVIHN000000000	SAMN37141173	SS-5100	Streptococcus suis
GCA_036680245.1	JAVIHO000000000	SAMN37141174	SS-5214	Streptococcus suis
GCA_036680205.1	JAVIHQ000000000	SAMN37141176	SS-5299	Streptococcus suis
GCA_036680215.1	JAVIHP000000000	SAMN37141175	SS-5221	Streptococcus suis
GCA_036680185.1	JAVIHR000000000	SAMN37141177	SS-5343	Streptococcus suis
GCA_036680165.1	JAVIHS000000000	SAMN37141178	SS-5370	Streptococcus suis
GCA_036680145.1	JAVIHT000000000	SAMN37141179	SS-5395	Streptococcus suis
GCA_036680125.1	JAVIHU000000000	SAMN37141180	SS-5466	Streptococcus suis
GCA_036680105.1	JAVIHV000000000	SAMN37141181	SS-5470	Streptococcus suis
GCA_036680085.1	JAVIHW000000000	SAMN37141182	SS-5559	Streptococcus suis
GCA_036680065.1	JAVIHX000000000	SAMN37141183	SS-5613	Streptococcus suis
GCA_036680045.1	JAVIHY000000000	SAMN37141184	SS-5700	Streptococcus suis
GCA_036680025.1	JAVIHZ000000000	SAMN37141185	SS-5794	Streptococcus suis
GCA_036680005.1	JAVIIA000000000	SAMN37141186	SS-5801	Streptococcus suis
GCA_036679965.1	JAVIIB000000000	SAMN37141187	SS-5802	Streptococcus suis
GCA_036680925.1	JAVIGK000000000	SAMN37141144	SS-5653	Streptococcus suis
GCA_036680905.1	JAVIGJ000000000	SAMN37141143	SS-5368	Streptococcus suis
GCA_036680885.1	JAVIGH000000000	SAMN37141141	PP-916	Streptococcus suis
GCA_036680865.1	JAVIGI000000000	SAMN37141142	SS-4462	Streptococcus suis
GCA_036680845.1	JAVIGG000000000	SAMN37141140	PP-915	Streptococcus suis
GCA_036680815.1	JAVIGM000000000	SAMN37141146	SS-5796	Streptococcus suis
GCA_036680805.1	JAVIGP000000000	SAMN37141149	PP-829	Streptococcus suis
GCA_036680785.1	JAVIGL000000000	SAMN37141145	SS-5795	Streptococcus suis
GCA_036680765.1	JAVIGN000000000	SAMN37141147	PP-800	Streptococcus suis
GCA_036680745.1	JAVIGO000000000	SAMN37141148	PP-816	Streptococcus suis
GCA_036680725.1	JAVIGR000000000	SAMN37141151	PP-854	Streptococcus suis
GCA_036680705.1	JAVIGQ000000000	SAMN37141150	PP-831	Streptococcus suis
GCA_036680685.1	JAVIGS000000000	SAMN37141152	PP-858	Streptococcus suis
GCA_036680665.1	JAVIGU000000000	SAMN37141154	PP-867	Streptococcus suis
GCA_036680645.1	JAVIGT000000000	SAMN37141153	PP-864	Streptococcus suis
GCA_036680625.1	JAVIGV000000000	SAMN37141155	PP-871	Streptococcus suis
GCA_036680605.1	JAVIGY000000000	SAMN37141158	PP-883	Streptococcus suis
GCA_036680585.1	JAVIGX000000000	SAMN37141157	PP-877	Streptococcus suis
GCA_036680565.1	JAVIGW000000000	SAMN37141156	PP-876	Streptococcus suis
GCA_036680545.1	JAVIGZ000000000	SAMN37141159	PP-885	Streptococcus suis
GCA_036680525.1	JAVIHB000000000	SAMN37141161	PP-910	Streptococcus suis
GCA_036680505.1	JAVIHA000000000	SAMN37141160	PP-896	Streptococcus suis
GCA_036680485.1	JAVIHC000000000	SAMN37141162	PP-911	Streptococcus suis
GCA_036680465.1	JAVIHD000000000	SAMN37141163	PP-913	Streptococcus suis
GCA_036680445.1	JAVIHE000000000	SAMN37141164	PP-920	Streptococcus suis
GCA_036680405.1	JAVIHH000000000	SAMN37141167	SS-4380	Streptococcus suis
GCA_036680415.1	JAVIHG000000000	SAMN37141166	PP-922	Streptococcus suis
GCA_036680385.1	JAVIHF000000000	SAMN37141165	PP-921	Streptococcus suis
GCA_036679945.1	JAVIIC000000000	SAMN37141188	SS-5817	Streptococcus suis
GCA_036679905.1	JAVIIF000000000	SAMN37141191	SS-5914	Streptococcus suis
GCA_036679885.1	JAVIIH000000000	SAMN37141193	SS-6041	Streptococcus suis
GCA_036679845.1	JAVIIE000000000	SAMN37141190	SS-5896	Streptococcus suis
GCA_036679825.1	JAVIIG000000000	SAMN37141192	SS-5946	Streptococcus suis
GCA_036679765.1	JAVIGB000000000	SAMN37141135	PP-851	Streptococcus suis
GCA_036679715.1	JAVIGE000000000	SAMN37141138	PP-904	Streptococcus suis
GCA_036679735.1	JAVIGC000000000	SAMN37141136	PP-892	Streptococcus suis
GCA_036679705.1	JAVIGD000000000	SAMN37141137	PP-901	Streptococcus suis
GCA_036679685.1	JAVIGF000000000	SAMN37141139	PP-912	Streptococcus suis

SRA Data Details

Parameter	Value
Data volume, Gbases	11
Data volume, Mbytes	3864

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Genetic diversity and antimicrobial susceptibility of Streptococcus suis in diseased Swiss pigs

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