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Genome Information for Gavia stellata
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The red-throated loon (North America) or red-throated diver (Britain and Ireland) (Gavia stellata) is a migratory aquatic bird found in the northern hemisphere. The most widely distributed member of the loon or diver family, it breeds primarily in Arctic regions, and winters in northern coastal waters (from Wikipedia entry). This sample is from a male in Greenland, collected by Mikkel Sinding, coordinated by Tom Gilbert, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
Accession | PRJNA1009091 |
Type | Umbrella project |
Organism | Gavia stellata[Taxonomy ID: 37040] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia; Gavia stellata |
Submission | Registration date: 24-Aug-2023 Vertebrate Genomes Project |
Relevance | Reference genome |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 26493 |
WGS master | 2 |
Transcript | 25173 |
SRA Experiments | 9 |
Protein Sequences | 24081 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 1 |
Assembly | 2 |
This project encompasses the following 4 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total | 3 1 4
|
BioProject accession | Assembly level | Name | Title |
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PRJNA1008847 | Chromosomes | Gavia stellata | Gavia stellata (red-throated loon) genome, bGavSte3, haplotype 2 (Vertebrate Genomes Project) | PRJNA1008846 | Chromosomes | Gavia stellata | Gavia stellata (red-throated loon) genome, bGavSte3, haplotype 1 (Vertebrate Genomes Project) | PRJNA1021185 | Chromosomes | Gavia stellata | Gavia stellata (red-throated loon) genome, bGavSte3, haplotype 2 (NCBI) | PRJNA1145949 | SRA or Trace | Gavia stellata (red-throated loon) genome, bGavSte3, sequence data | Gavia stellata (red-throated loon) genome, bGavSte3, sequence data (Vertebrate Genomes Project) |
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