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Genome Information for Erythrolamprus reginae
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The royal ground snake (Erythrolamprus reginae) is in the family Colubridae of snakes. This species is endemic to northern South America, and is non-venomous. This sample was collected by Valeria Ramirez Castaneda in the Rebecca D. Tarvin Lab at UC Berkley, from a female in Southern Colombia, in an Amazon forest area, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA1009437 |
| Type | Umbrella project |
| Organism | Erythrolamprus reginae[Taxonomy ID: 121349] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Dipsadidae; Erythrolamprus; Erythrolamprus reginae |
| Submission | Registration date: 25-Aug-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 17 |
| WGS master | 3 |
| SRA Experiments | 8 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 2 |
| Assembly | 3 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
1
2
2
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA921730 | Chromosomes | Erythrolamprus reginae | Erythrolamprus reginae (royal ground snake) genome, rEryReg1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA921729 | Contigs | Erythrolamprus reginae | Erythrolamprus reginae (royal ground snake) genome, rEryReg1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA996865 | Contigs | Erythrolamprus reginae | Erythrolamprus reginae (royal ground snake) genome, rEryReg1, haplotype 3 (Vertebrate Genomes Project) | | PRJNA1164416 | SRA or Trace | Erythrolamprus reginae (royal ground snake) transcriptome, rEryReg1 | Erythrolamprus reginae (royal ground snake) transcriptome, rEryReg1 (Vertebrate Genomes Project) | | PRJNA1167274 | SRA or Trace | Erythrolamprus reginae (royal ground snake) transcriptome, rEryReg2 | Erythrolamprus reginae (royal ground snake) transcriptome, rEryReg2 (Vertebrate Genomes Project) |
|