ID 1010642 - BioProject

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Accession: PRJEB65471 ID: 1010642

EMG produced TPA metagenomics assembly of PRJNA680735 data set (Metagenome of the lower urinary tract).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA680735, and was assembled with metaspades v3. More...

Accession	PRJEB65471
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 30-Aug-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1015
WGS master	16
Publications
PubMed	1
PMC	1
Other datasets
BioSample	16
Assembly	16

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

16
16

Assembly	WGS	BioSample	Taxonomy
GCA_963512585.1	CAUPNH000000000	SAMEA114402626	Bifidobacterium breve
GCA_963511445.1	CAUPJB000000000	SAMEA114402623	Citrobacter koseri
GCA_963512755.1	CAUPNN000000000	SAMEA114402621	Enterobacter hormaechei
GCA_963510225.1	CAUPDU000000000	SAMEA114402634	Enterococcus faecalis
GCA_963510305.1	CAUPEK000000000	SAMEA114402627	Escherichia coli
GCA_963512715.1	CAUPNE000000000	SAMEA114402631	Gardnerella vaginalis
GCA_963511265.1	CAUPIM000000000	SAMEA114402622	Lactobacillus crispatus
GCA_963510265.1	CAUPEN000000000	SAMEA114402624	Lactobacillus delbrueckii
GCA_963510135.1	CAUPDX000000000	SAMEA114402630	Lactobacillus gasseri
GCA_963512465.1	CAUPMH000000000	SAMEA114402633	Lactobacillus iners
GCA_963510245.1	CAUPDY000000000	SAMEA114402632	Lactobacillus jensenii
GCA_963512385.1	CAUPMP000000000	SAMEA114402635	Proteus mirabilis
GCA_963510315.1	CAUPEO000000000	SAMEA114402625	Pseudomonas aeruginosa
GCA_963511195.1	CAUPIG000000000	SAMEA114402636	Staphylococcus epidermidis
GCA_963512745.1	CAUPOD000000000	SAMEA114402629	uncultured Burkholderia sp.
GCA_963512445.1	CAUPMS000000000	SAMEA114402628	uncultured Ralstonia sp.

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EMG produced TPA metagenomics assembly of PRJNA680735 data set (Metagenome of the lower urinary tract).

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