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Genome Information for Chryseobacterium
We isolated an efficient doxycycline degrading strain Chryseobacterium sp. WX1. To investigate gene expression patterns during doxycyclinedegradation by strain WX1, we conducted a comparative transcriptomic analysis using cultures of strain WX1 with and without doxycycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Chryseobacterium sp. WX1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.
Overall design: Control groups (WX1_CK): cultures of strain WX1 without doxycycline addition. Experimental groups (WX1_DOX):cultures of strain WX1 with 50 mg/L doxycycline.
| Accession | PRJNA1014720; GEO: GSE242785 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Chryseobacterium sp.[Taxonomy ID: 1871047] Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; Chryseobacterium sp. |
| Submission | Registration date: 9-Sep-2023
Peking University |
| Relevance | Unknown |
Project Data:
| Resource Name | Number
of Links |
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| Sequence data |
| SRA Experiments | 6 |
| Other datasets |
| BioSample | 6 |
| GEO DataSets | 1 |