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Accession: PRJNA1024537 ID: 1024537

Escherichia

GenomeTrakr Project: University of California, Davis | School of Veterinary Medicine

Escherichia coli isolates from dairy farms.
AccessionPRJNA1024537
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 5-Oct-2023
FDA Center for Food Safety and Applied Nutrition
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)236
SRA Experiments236
Other datasets
BioSample237
Assembly236
Assembly details:
Assembly levelNumber of Assemblies
236
236
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_032429275.1ContigABNLDD000000000SAMN36638876
23M04FM5-512
GCA_032429215.1ContigABNLDA000000000SAMN36638882
23J03FM8-428
GCA_032429175.1ContigABNLCW000000000SAMN36638881
23D01FS3-367A
GCA_032429155.1ContigABNLCX000000000SAMN36638873
23J03FM28-448
GCA_032177625.1ContigABNBVD000000000SAMN36307262
23M04FM9-516
GCA_032177495.1ContigABNBVI000000000SAMN36306986
23M04FM14-521
GCA_032179865.1ContigABNBYP000000000SAMN36305225
23K03FM1-452
GCA_032179345.1ContigABNBXP000000000SAMN36304783
23L04FM25-505
GCA_032180225.1ContigABNBZH000000000SAMN36302702
23L04FM14-494
GCA_032180065.1ContigABNBYY000000000SAMN36303419
23M04FM2-509
GCA_032180105.1ContigABNBZB000000000SAMN36303397
23L04FM24-504
GCA_032180085.1ContigABNBZA000000000SAMN36303388
23M04FM3-510
GCA_032180205.1ContigABNBZG000000000SAMN36302693
23L04FM11-491
GCA_032180185.1ContigABNBZF000000000SAMN36302695
23L04FM15-495
GCA_032180165.1ContigABNBZC000000000SAMN36303018
23L04FM12-492
GCA_032180125.1ContigABNBZD000000000SAMN36303015
23M04FM8-515
GCA_029034795.1ContigABKXYE000000000SAMN33595833
22E10FM6-134D
GCA_029017365.1ContigABKXOT000000000SAMN33600765
22C09FS3-43A
GCA_029017405.1ContigABKXOY000000000SAMN33598468
22D09FS3-59B
GCA_029015685.1ContigABKXLS000000000SAMN33599587
22D09FS7-63B
GCA_029015645.1ContigABKXLQ000000000SAMN33599584
22B09FS6-30B
GCA_029015625.1ContigABKXLM000000000SAMN33596839
22B10FS6-104B
GCA_029015725.1ContigABKXLR000000000SAMN33597115
22B10FM3-95B
GCA_029015045.1ContigABKXKL000000000SAMN33599594
22E10FS10-148A
GCA_029015025.1ContigABKXKK000000000SAMN33599595
22C09FS2-42A
GCA_029015005.1ContigABKXKH000000000SAMN33600209
22B09FS5-29B
GCA_029014985.1ContigABKXKJ000000000SAMN33599596
22B09FS8-32A
GCA_029014965.1ContigABKXKI000000000SAMN33599586
22A10FM5-85B
GCA_029014945.1ContigABKXKG000000000SAMN33600760
22D11FS6-196B
GCA_029014625.1ContigABKXJM000000000SAMN33596940
22A12FM2-240C
GCA_029014605.1ContigABKXJN000000000SAMN33595834
22B10FM5-97A
GCA_029014845.1ContigABKXKB000000000SAMN33595837
22E10FM6-134C
GCA_029014805.1ContigABKXKA000000000SAMN33595848
22C10FS5-115A
GCA_029014445.1ContigABKXJI000000000SAMN33596941
22B09FS3-27B
GCA_029014425.1ContigABKXJK000000000SAMN33595838
22C10FS2-112A
GCA_029014405.1ContigABKXJH000000000SAMN33596959
22F11FM6-202G
GCA_029014365.1ContigABKXJJ000000000SAMN33595835
22B10FS6-104A
GCA_029015565.1ContigABKXLL000000000SAMN33596841
22A12FM6-244C
GCA_029015545.1ContigABKXLJ000000000SAMN33596848
22A12FM2-240B
GCA_029015525.1ContigABKXLI000000000SAMN33596847
22D10FS2-124A
GCA_029015505.1ContigABKXLK000000000SAMN33596838
22A09FM6-6A
GCA_029015485.1ContigABKXLG000000000SAMN33596844
22C10FS6-116B
GCA_029015465.1ContigABKXLH000000000SAMN33596843
22B09FS2-26A
GCA_029015445.1ContigABKXLE000000000SAMN33598323
22G12FM1-217C
GCA_029015405.1ContigABKXLD000000000SAMN33597117
22E10FM6-134B
GCA_029015425.1ContigABKXLF000000000SAMN33596971
22F11FM6-202C
GCA_029015385.1ContigABKXLC000000000SAMN33597120
22E10FM5-133A
GCA_029015345.1ContigABKXLA000000000SAMN33598467
22C12FM2-264B
GCA_029015365.1ContigABKXKY000000000SAMN33599588
22C12FM5-267A
GCA_029015325.1ContigABKXLB000000000SAMN33598464
22D09FS5-61A
GCA_029015305.1ContigABKXKZ000000000SAMN33598470
22D09FS4-60A
GCA_029015285.1ContigABKXKX000000000SAMN33599592
22A10FM6-86B
GCA_029015265.1ContigABKXKW000000000SAMN33599597
22C11FS6-184A
GCA_029015245.1ContigABKXKV000000000SAMN33600207
22C11FS4-182B
GCA_029015225.1ContigABKXKU000000000SAMN33599682
22C11FS4-182A
GCA_029015205.1ContigABKXKT000000000SAMN33600210
22C11FS1-179A
GCA_029015165.1ContigABKXKM000000000SAMN33598473
22A12FS4-248A
GCA_029016065.1ContigABKXMK000000000SAMN33599591
22A10FM6-86A
GCA_029016025.1ContigABKXMJ000000000SAMN33599590
22F11FM6-202A
GCA_029016035.1ContigABKXMI000000000SAMN33599593
22D10FS4-126B
GCA_029016005.1ContigABKXMG000000000SAMN33599589
22D09FS8-64B
GCA_029015985.1ContigABKXMF000000000SAMN33599683
22B09FS8-32B
GCA_029015965.1ContigABKXMH000000000SAMN33600212
22F11FM6-202A
GCA_029016805.1ContigABKXNQ000000000SAMN33600761
22C09FS8-48B
GCA_029016515.1ContigABKXND000000000SAMN33599585
22A10FM5-85A
GCA_029016495.1ContigABKXNE000000000SAMN33596846
22B09FS2-26B
GCA_029016445.1ContigABKXNC000000000SAMN33600763
22C09FS2-42B
GCA_029016465.1ContigABKXNB000000000SAMN33599583
22D10FS2-124B
GCA_029020625.1ContigABKXUW000000000SAMN33596951
22B09FS5-29A
GCA_029020605.1ContigABKXUV000000000SAMN33596969
22F11FM6-202F
GCA_029020545.1ContigABKXUU000000000SAMN33596975
22A10FS2-88B
GCA_029020525.1ContigABKXUT000000000SAMN33596948
22G12FM1-217D
GCA_029020505.1ContigABKXUP000000000SAMN33598466
22D09FS7-63A
GCA_029020465.1ContigABKXUO000000000SAMN33596973
22F11FM6-202D
GCA_029020445.1ContigABKXUM000000000SAMN33596976
22G12FM1-217A
GCA_029020425.1ContigABKXUN000000000SAMN33598325
22E10FM5-133D
GCA_029020405.1ContigABKXUL000000000SAMN33597119
22A10FS6-92A
GCA_029020385.1ContigABKXUJ000000000SAMN33598322
22A10FS5-91A
GCA_029020365.1ContigABKXUI000000000SAMN33596949
22B09FS4-28A
GCA_029020345.1ContigABKXUK000000000SAMN33596842
22A12FM6-244D
GCA_029020305.1ContigABKXUH000000000SAMN33596845
22A12FM2-240A
GCA_029020105.1ContigABKXTW000000000SAMN33596952
22A12FM6-244B
GCA_029021445.1ContigABKXWL000000000SAMN33597118
22E10FM5-133C
GCA_029021425.1ContigABKXWI000000000SAMN33597113
22E10FM6-134A
GCA_029021405.1ContigABKXWG000000000SAMN33596966
22F11FM6-202H
GCA_029021385.1ContigABKXWJ000000000SAMN33596840
22C10FS1-111B
GCA_029021365.1ContigABKXWH000000000SAMN33598462
22F11FS2-208B
GCA_029021325.1ContigABKXWF000000000SAMN33598465
22B12FM2-252H
GCA_029021285.1ContigABKXWB000000000SAMN33600206
22B09FS7-31A
GCA_029021185.1ContigABKXVY000000000SAMN33598469
22A12FS4-248B
GCA_029021165.1ContigABKXVU000000000SAMN33598471
22A12FS2-246B
GCA_029021125.1ContigABKXVT000000000SAMN33600211
22C09FM1-33B
GCA_029021105.1ContigABKXVV000000000SAMN33596947
22C10FS6-116A
GCA_029021085.1ContigABKXVP000000000SAMN33598463
22A12FS2-246A
GCA_029021065.1ContigABKXVO000000000SAMN33596963
22A10FS1-87A
GCA_029021045.1ContigABKXVS000000000SAMN33596944
22C10FS5-115B
GCA_029021005.1ContigABKXVM000000000SAMN33596945
22B09FM2-18A
GCA_029020985.1ContigABKXVK000000000SAMN33596954
22G12FM1-217B
GCA_029020965.1ContigABKXVI000000000SAMN33598324
22A10FS5-91B
GCA_029020925.1ContigABKXVH000000000SAMN33598472
22A12FS5-249B
GCA_029020905.1ContigABKXVF000000000SAMN33597111
22A10FS3-89A
GCA_029020885.1ContigABKXVJ000000000SAMN33596950
22A12FM6-244A
GCA_029020845.1ContigABKXVQ000000000SAMN33596953
22B09FS3-27A
GCA_029020825.1ContigABKXVE000000000SAMN33597114
22E10FM5-133B
GCA_029020765.1ContigABKXVC000000000SAMN33600208
22A11FS1-155A
GCA_029020745.1ContigABKXUZ000000000SAMN33597121
22A10FS6-92B
GCA_029020705.1ContigABKXVA000000000SAMN33596957
22A10FS1-87B
GCA_029020045.1ContigABKXTV000000000SAMN33596961
22A10FS2-88A
GCA_029020025.1ContigABKXTT000000000SAMN33596942
22A12FM2-240D
GCA_029019985.1ContigABKXTS000000000SAMN33596946
22F11FM6-202E
GCA_029645965.1ContigABLKTE000000000SAMN33597116
22F11FM6-202B
GCA_042275705.1ContigABVBOV000000000SAMN38081209
23N05FM10-544E
GCA_042275685.1ContigABVBOT000000000SAMN38081208
23N05FM6-540A
GCA_042275745.1ContigABVBOW000000000SAMN38081123
23N05FM12-546C
GCA_042275725.1ContigABVBOU000000000SAMN38081207
23N05FM5-539C
GCA_042275765.1ContigABVBOX000000000SAMN38081121
23N05FM11-545C
GCA_042275865.1ContigABVBPB000000000SAMN38081106
23N05FM13-547E
GCA_042275845.1ContigABVBPD000000000SAMN38080879
23N05FM55-589G
GCA_042275825.1ContigABVBPA000000000SAMN38081103
23N05FM14-548F
GCA_042275805.1ContigABVBOZ000000000SAMN38081105
23N05FM25-559F
GCA_042275785.1ContigABVBOY000000000SAMN38081108
23N05FM31-565H
GCA_042275965.1ContigABVBPH000000000SAMN38080779
23N05FM39-573A
GCA_042275945.1ContigABVBPG000000000SAMN38080780
23N05FM46-580D
GCA_042275925.1ContigABVBPE000000000SAMN38080774
23N05FM49-583F
GCA_042275905.1ContigABVBPF000000000SAMN38080781
23N05FM40-574B
GCA_042275885.1ContigABVBPC000000000SAMN38080776
23N05FM47-581I
GCA_042276005.1ContigABVBPJ000000000SAMN38080746
23P06FM11-603B
GCA_042275985.1ContigABVBPI000000000SAMN38080743
23P06FM13-605B
GCA_038386405.1ContigABRTYJ000000000SAMN34566516
23D01FM1-363B
GCA_038386385.1ContigABRTYH000000000SAMN34566519
23I02FM16-386A
GCA_038386365.1ContigABRTYI000000000SAMN34566522
23B01FM5-339A
GCA_038386345.1ContigABRTYG000000000SAMN34566552
23B01FS3-343B
GCA_038386265.1ContigABRTYF000000000SAMN34566554
23B01FM6-340A
GCA_038386205.1ContigABRTYD000000000SAMN34566556
23D01FM1-359A
GCA_038386185.1ContigABRTYE000000000SAMN34566553
23C01FM4-350A
GCA_038386165.1ContigABRTYC000000000SAMN34566559
23D01FM2-360A
GCA_038386145.1ContigABRTYB000000000SAMN34587757
23I02FS18-418A
GCA_038386065.1ContigABRTYA000000000SAMN34587515
23B01FM4-338A
GCA_038386035.1ContigABRTXX000000000SAMN34587849
23D01FS4-368B
GCA_038386015.1ContigABRTXZ000000000SAMN34587526
23I02FS10-410A
GCA_038385965.1ContigABRTXY000000000SAMN34587794
23I02FM17-387A
GCA_038385945.1ContigABRTXW000000000SAMN34587860
23I02FM28-398D
GCA_038385885.1ContigABRTXV000000000SAMN34587857
23D01FS1-365A
GCA_038385845.1ContigABRTXT000000000SAMN34587855
23I02FS6-406A
GCA_038385825.1ContigABRTZL000000000SAMN34587799
23I02FS13-413A
GCA_038385805.1ContigABRTXU000000000SAMN34587847
23D01FS6-370A
GCA_038385685.1ContigABRTXS000000000SAMN34587851
23I02FS8-408B
GCA_038385745.1ContigABRTZK000000000SAMN34587863
23I02FS5-405A
GCA_038385665.1ContigABRTXR000000000SAMN34587804
23I02FM20-390A
GCA_038385645.1ContigABRTXQ000000000SAMN34997004
23H01FS1-313A
GCA_038385605.1ContigABRTXP000000000SAMN34997054
23H01FM9-311A
GCA_038385565.1ContigABRTXO000000000SAMN34997120
23B01FM3-337A
GCA_038385505.1ContigABRTXN000000000SAMN34997116
23B01FS6-346A
GCA_038385465.1ContigABRTXM000000000SAMN34997147
23C01FM1-347A
GCA_038385425.1ContigABRTXL000000000SAMN35158157
23I02FS15-415C
GCA_038385405.1ContigABRTXK000000000SAMN38080731
23P06FM22-614B
GCA_038385355.1ContigABRTXJ000000000SAMN38080739
23O06FM1-623A
GCA_038385315.1ContigABRTXI000000000SAMN38080729
23P06FM27-619A
GCA_038385275.1ContigABRTXG000000000SAMN38080748
23P06FM20-612C
GCA_038385235.1ContigABRTXH000000000SAMN38080741
23P06FM28-620B
GCA_038385175.1ContigABRTXA000000000SAMN38080782
23P06FM5-597A
GCA_038385155.1ContigABRTXF000000000SAMN38080756
23P06FM15-607A
GCA_038385115.1ContigABRTXB000000000SAMN38080760
23P06FM7-599A
GCA_038385095.1ContigABRTXE000000000SAMN38080777
23N05FM52-586C
GCA_038385075.1ContigABRTWY000000000SAMN38080778
23N05FM51-585G
GCA_038384995.1ContigABRTXC000000000SAMN38080880
23N05FS2-592B
GCA_038384955.1ContigABRTWX000000000SAMN38080881
23N05FS1-591B
GCA_038384915.1ContigABRTWZ000000000SAMN34566316
23H01FS5-317C
GCA_038384925.1ContigABRTXD000000000SAMN38080936
23D01FS6-370C
GCA_038390435.1ContigABRUEB000000000SAMN34587867
23D01FS5-369A
GCA_038390495.1ContigABRUEC000000000SAMN34587514
23I02FS17-417A
GCA_038390475.1ContigABRUED000000000SAMN34587802
23D01FS2-366B
GCA_038390395.1ContigABRUEE000000000SAMN34587797
23I02FS3-403C
GCA_038393355.1ContigABRUJE000000000SAMN38081201
23M04FM17-524A
GCA_038393335.1ContigABRUIO000000000SAMN38080941
23D01FS5-369B
GCA_038393315.1ContigABRUIM000000000SAMN38080943
23B01FS3-343C
GCA_038393295.1ContigABRUIN000000000SAMN38080937
23D01FS5-369D
GCA_038393275.1ContigABRUIL000000000SAMN38080939
23B01FS6-346B
GCA_038393255.1ContigABRUIK000000000SAMN38080938
23B01FS6-346C
GCA_038393235.1ContigABRUII000000000SAMN38080942
23B01FS3-343D
GCA_038393215.1ContigABRUIJ000000000SAMN38080940
23D01FS5-369C
GCA_038393195.1ContigABRUIH000000000SAMN38080952
23O06FM13-634C
GCA_038393175.1ContigABRUIG000000000SAMN38080948
23O06FM14-635A
GCA_038393155.1ContigABRUID000000000SAMN38080964
23O06FM23-644C
GCA_038393135.1ContigABRUIF000000000SAMN38080955
23O06FM21-642B
GCA_038393115.1ContigABRUIE000000000SAMN38080958
23O06FM19-640
GCA_038393095.1ContigABRUIC000000000SAMN38080963
23A01FS3-331B
GCA_038393075.1ContigABRUIB000000000SAMN38081002
23O06FM12-633A
GCA_038393055.1ContigABRUIA000000000SAMN38081003
23O06FM7-628B
GCA_038393035.1ContigABRUHZ000000000SAMN38081005
23O06FM24-645A
GCA_038393015.1ContigABRUHX000000000SAMN38081015
23R08FM12-758A
GCA_038392995.1ContigABRUHW000000000SAMN38081018
23Q07FM9-692B
GCA_038392975.1ContigABRUHV000000000SAMN38081020
23R08FM22-768B
GCA_038392955.1ContigABRUHY000000000SAMN38081008
23R08FM14-760C
GCA_038392935.1ContigABRUHT000000000SAMN38081006
23R08FM16-762C
GCA_038392915.1ContigABRUHS000000000SAMN38081019
23Q07FM9-692A
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23Q07FM18-701
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23O06FM8-629
GCA_038392855.1ContigABRUHP000000000SAMN38081017
23Q07FM7-690
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23Q07FM16-699
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23O06FM26-647A
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23Q07FM1-684B
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23I02FS19-419C
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23Q07FM1-684A
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23B07FM29-680B
GCA_038392695.1ContigABRUHI000000000SAMN38081039
23B07FM13-664A
GCA_038392675.1ContigABRUHH000000000SAMN38081043
23I02FS19-419D
GCA_038392655.1ContigABRUHE000000000SAMN38081104
23N05FM24-558J
GCA_038392635.1ContigABRUHF000000000SAMN38081101
23I02FS10-410B
GCA_038392615.1ContigABRUHG000000000SAMN38081100
23I02FS5-405D
GCA_038392595.1ContigABRUHD000000000SAMN38081107
23Q07FM5-688
GCA_038392575.1ContigABRUHB000000000SAMN38081102
23I02FS17-417B
GCA_038392555.1ContigABRUHC000000000SAMN38081111
23N05FM34-568B
GCA_038392535.1ContigABRUHA000000000SAMN38081114
23N05FM35-569E
GCA_038392515.1ContigABRUGZ000000000SAMN38081116
23M04FS1-533
GCA_038392495.1ContigABRUGX000000000SAMN38081156
23A08FM19-734A
GCA_038392475.1ContigABRUGY000000000SAMN38081118
23N05FM30-564A
GCA_038392455.1ContigABRUGW000000000SAMN38081154
23A08FM16-731B
GCA_038392435.1ContigABRUGU000000000SAMN38081160
23A08FM26-741A
GCA_038392415.1ContigABRUGT000000000SAMN38081162
23M04FM21-528B
GCA_038392395.1ContigABRUGV000000000SAMN38081158
23A08FM25-740D
GCA_038392375.1ContigABRUGR000000000SAMN38081198
23M04FM25-532A
GCA_038392355.1ContigABRUGS000000000SAMN38081199
23M04FM16-523A
GCA_038392335.1ContigABRUJD000000000SAMN38081200
23A08FM29-744B
GCA_038392315.1ContigABRUJC000000000SAMN38081206
23A08FM6-721B
GCA_038392295.1ContigABRUJA000000000SAMN38081210
23A08FM7-722B
GCA_038392275.1ContigABRUIZ000000000SAMN38081212
23M04FS2-534A
GCA_038392255.1ContigABRUJB000000000SAMN38081203
23R08FM28-774A
GCA_038392235.1ContigABRUIY000000000SAMN38081213
23N05FM4-538B
GCA_038392215.1ContigABRUIX000000000SAMN38081211
23A08FM8-723A
GCA_038386585.1ContigABRTYN000000000SAMN34566318
23H01FS4-316C
GCA_038386565.1ContigABRTYM000000000SAMN34566453
23H01FM5-307B
GCA_038383145.1ContigABRTOR000000000SAMN34587788
23B01FM1-335A
GCA_038386525.1ContigABRTYK000000000SAMN34566452
23H01FS2-314A
GCA_038386475.1ContigABRTYL000000000SAMN34566447
23A01FS3-331A
SRA Data Details
ParameterValue
Data volume, Gbases121
Data volume, Mbytes43198

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  • Escherichia
    Escherichia
    GenomeTrakr Project: University of California, Davis | School of Veterinary Medicine
    BioProject
  • Chain J, Alpha-conotoxin GIC
    Chain J, Alpha-conotoxin GIC
    gi|1047463041|pdb|5CO5|J
    Protein

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