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Accession: PRJNA1026956 ID: 1026956

Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults

Despite their crucial importance for human health, little is known about how the gut resistome changes with age or in response to antibiotic treatment across ages. Here, we used fecal metagenomic data from Danish infants and young adults to fill this gap.
AccessionPRJNA1026956
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 11-Oct-2023
University of Copenhagen
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1189
Other datasets
BioSample1228
Assembly1189
Assembly details:
Assembly levelNumber of Assemblies
908
281
1189
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_034151785.1ContigJAWZLH000000000SAMN37770841
S_1039
GCA_034133385.1ScaffoldJAWYZC000000000SAMN37770305
S_713
GCA_034150105.1ContigJAWZNG000000000SAMN37770895
S_1093
GCA_034122585.1ScaffoldJAWYED000000000SAMN37768842
S_151
GCA_034139925.1ScaffoldJAWZGE000000000SAMN37770535
S_900
GCA_034131005.1ScaffoldJAWYJP000000000SAMN37768992
S_301
GCA_034131405.1ScaffoldJAWYIX000000000SAMN37768973
S_282
GCA_034133525.1ContigJAWYYU000000000SAMN37770297
S_705
GCA_034133505.1ScaffoldJAWYYW000000000SAMN37770299
S_707
GCA_034132985.1ContigJAWYZW000000000SAMN37770325
S_733
GCA_034132845.1ScaffoldJAWZAD000000000SAMN37770333
S_741
GCA_034132645.1ScaffoldJAWZAM000000000SAMN37770342
S_750
GCA_034133985.1ScaffoldJAWYXX000000000SAMN37770274
S_682
GCA_034133825.1ScaffoldJAWYYG000000000SAMN37770283
S_691
GCA_034131585.1ScaffoldJAWYIN000000000SAMN37768962
S_271
GCA_034131285.1ContigJAWYJB000000000SAMN37768977
S_286
GCA_034131845.1ScaffoldJAWYHX000000000SAMN37768945
S_254
GCA_034131945.1ScaffoldJAWYHT000000000SAMN37768941
S_250
GCA_034130505.1ContigJAWYKN000000000SAMN37769017
S_326
GCA_034139585.1ScaffoldJAWZGM000000000SAMN37770543
S_908
GCA_034140665.1ScaffoldJAWZFP000000000SAMN37770520
S_885
GCA_034138945.1ScaffoldJAWZHC000000000SAMN37770560
S_925
GCA_034135985.1ScaffoldJAWYUT000000000SAMN37770191
S_599
GCA_034136205.1ScaffoldJAWYUO000000000SAMN37770186
S_594
GCA_034136825.1ScaffoldJAWYTZ000000000SAMN37770171
S_579
GCA_034137955.1ScaffoldJAWZIE000000000SAMN37770591
S_956
GCA_034137345.1ScaffoldJAWYTM000000000SAMN37770158
S_566
GCA_034142465.1ScaffoldJAWZDW000000000SAMN37770475
S_840
GCA_034141985.1ScaffoldJAWZEJ000000000SAMN37770488
S_853
GCA_034142985.1ContigJAWZDA000000000SAMN37770453
S_818
GCA_034144065.1ScaffoldJAWZBW000000000SAMN37770423
S_788
GCA_034146605.1ContigJAWZSD000000000SAMN37771030
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S_997
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S_1016
GCA_034144105.1ScaffoldJAWZBU000000000SAMN37770421
S_786
GCA_034148385.1ContigJAWZPT000000000SAMN37770965
S_1163
GCA_034148365.1ContigJAWZPQ000000000SAMN37770962
S_1160
GCA_034148485.1ContigJAWZPN000000000SAMN37770959
S_1157
GCA_034148245.1ContigJAWZPU000000000SAMN37770966
S_1164
GCA_034148145.1ContigJAWZPX000000000SAMN37770969
S_1167
GCA_034148045.1ContigJAWZQB000000000SAMN37770973
S_1171
GCA_034147925.1ContigJAWZQF000000000SAMN37770977
S_1175
GCA_034147865.1ContigJAWZQG000000000SAMN37770978
S_1176
GCA_034147765.1ContigJAWZQO000000000SAMN37770987
S_1185
GCA_034147705.1ContigJAWZQP000000000SAMN37770988
S_1186
GCA_034147685.1ContigJAWZQR000000000SAMN37770990
S_1188
GCA_034147545.1ContigJAWZQY000000000SAMN37770998
S_1196
GCA_034147425.1ContigJAWZRE000000000SAMN37771004
S_1202
GCA_034147445.1ContigJAWZRD000000000SAMN37771003
S_1201
GCA_034147385.1ContigJAWZRH000000000SAMN37771007
S_1205
GCA_034147325.1ContigJAWZRJ000000000SAMN37771009
S_1207
GCA_034147285.1ContigJAWZRL000000000SAMN37771011
S_1209
GCA_034147265.1ContigJAWZRM000000000SAMN37771012
S_1210
GCA_034147225.1ContigJAWZRO000000000SAMN37771014
S_1212
GCA_034149505.1ContigJAWZOK000000000SAMN37770927
S_1125
GCA_034148885.1ContigJAWZPE000000000SAMN37770950
S_1148
GCA_034148925.1ContigJAWZPC000000000SAMN37770948
S_1146
GCA_034149145.1ContigJAWZOY000000000SAMN37770944
S_1142
GCA_034149905.1ContigJAWZNQ000000000SAMN37770906
S_1104
GCA_034149885.1ContigJAWZNR000000000SAMN37770907
S_1105
GCA_034149865.1ContigJAWZNS000000000SAMN37770908
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S_1103
GCA_034149805.1ContigJAWZNW000000000SAMN37770913
S_1111
GCA_034149725.1ContigJAWZNZ000000000SAMN37770916
S_1114
GCA_034149585.1ContigJAWZOF000000000SAMN37770922
S_1120
GCA_034149565.1ContigJAWZOH000000000SAMN37770924
S_1122
GCA_034149445.1ContigJAWZON000000000SAMN37770932
S_1130
GCA_034150065.1ContigJAWZNI000000000SAMN37770898
S_1096
GCA_034150245.1ContigJAWZMZ000000000SAMN37770887
S_1085
GCA_034150185.1ContigJAWZNB000000000SAMN37770889
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GCA_034151645.1ContigJAWZLN000000000SAMN37770848
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S_1049
GCA_034151545.1ContigJAWZLS000000000SAMN37770853
S_1051
GCA_034151485.1ContigJAWZLT000000000SAMN37770854
S_1052
GCA_034151385.1ContigJAWZLV000000000SAMN37770856
S_1054
GCA_034150965.1ContigJAWZMG000000000SAMN37770868
S_1066
GCA_034150845.1ContigJAWZMI000000000SAMN37770870
S_1068
GCA_034150745.1ContigJAWZMK000000000SAMN37770872
S_1070
GCA_034150645.1ContigJAWZMN000000000SAMN37770875
S_1073
GCA_034151765.1ContigJAWZLJ000000000SAMN37770844
S_1042
GCA_034152105.1ContigJAWZKR000000000SAMN37770825
S_1023
GCA_034151945.1ContigJAWZKZ000000000SAMN37770833
S_1031
GCA_034151925.1ContigJAWZKY000000000SAMN37770832
S_1030
GCA_034152825.1ScaffoldJAWYQA000000000SAMN37770066
S_474
GCA_034152465.1ScaffoldJAWYPO000000000SAMN37770054
S_462
GCA_034122545.1ScaffoldJAWYEE000000000SAMN37768843
S_152
GCA_034121945.1ScaffoldJAWYFJ000000000SAMN37768874
S_183
GCA_034121805.1ScaffoldJAWYFP000000000SAMN37768881
S_190
GCA_034123905.1ScaffoldJAWYCB000000000SAMN37768788
S_97
GCA_034124145.1ScaffoldJAWYBQ000000000SAMN37768777
S_86
GCA_034123525.1ContigJAWYCS000000000SAMN37768805
S_114
GCA_034122855.1ScaffoldJAWYDR000000000SAMN37768830
S_139
GCA_034126465.1ScaffoldJAWYSH000000000SAMN37770126
S_534
GCA_034125565.1ScaffoldJAWXZG000000000SAMN37768715
S_24
GCA_034125435.1ScaffoldJAWXZQ000000000SAMN37768725
S_34
GCA_034125145.1ScaffoldJAWXZX000000000SAMN37768732
S_41
GCA_034124425.1ScaffoldJAWYBB000000000SAMN37768762
S_71
GCA_034127895.1ScaffoldJAWYQW000000000SAMN37770088
S_496
GCA_034127765.1ScaffoldJAWYRB000000000SAMN37770093
S_501
GCA_034128485.1ScaffoldJAWYOJ000000000SAMN37770022
S_430
GCA_034128465.1ScaffoldJAWYOK000000000SAMN37770023
S_431
GCA_034126545.1ScaffoldJAWYSF000000000SAMN37770123
S_531
GCA_034138965.1ScaffoldJAWZHD000000000SAMN37770561
S_926
GCA_034138825.1ContigJAWZHH000000000SAMN37770565
S_930
GCA_034140745.1ScaffoldJAWZFN000000000SAMN37770518
S_883
GCA_034140425.1ContigJAWZFT000000000SAMN37770524
S_889
GCA_034138205.1ScaffoldJAWZHX000000000SAMN37770584
S_949
GCA_034137005.1ScaffoldJAWYTW000000000SAMN37770168
S_576
GCA_034136045.1ScaffoldJAWYUU000000000SAMN37770192
S_600
GCA_034135245.1ScaffoldJAWYVN000000000SAMN37770212
S_620
GCA_034130565.1ScaffoldJAWYKJ000000000SAMN37769013
S_322
GCA_034130405.1ScaffoldJAWYKQ000000000SAMN37769020
S_329
GCA_034130745.1ScaffoldJAWYKC000000000SAMN37769005
S_314
GCA_034132265.1ScaffoldJAWYHE000000000SAMN37768926
S_235
GCA_034131785.1ScaffoldJAWYIC000000000SAMN37768950
S_259
GCA_034131525.1ScaffoldJAWYIP000000000SAMN37768964
S_273
GCA_034131565.1ScaffoldJAWYIL000000000SAMN37768960
S_269
GCA_034134245.1ScaffoldJAWYXL000000000SAMN37770262
S_670
GCA_034135125.1ScaffoldJAWYVU000000000SAMN37770219
S_627
GCA_034134965.1ScaffoldJAWYWC000000000SAMN37770227
S_635
GCA_034135005.1ScaffoldJAWYWA000000000SAMN37770225
S_633
GCA_034134445.1ContigJAWYXA000000000SAMN37770251
S_659
GCA_034132765.1ScaffoldJAWZAF000000000SAMN37770335
S_743
GCA_034152385.1ScaffoldJAWYPL000000000SAMN37770051
S_459
GCA_034152345.1ScaffoldJAWYPJ000000000SAMN37770049
S_457
GCA_034152805.1ScaffoldJAWYQB000000000SAMN37770067
S_475
GCA_034152085.1ContigJAWZKQ000000000SAMN37770824
S_1022
GCA_034152065.1ContigJAWZKT000000000SAMN37770827
S_1025
GCA_034151985.1ContigJAWZKX000000000SAMN37770831
S_1029
GCA_034150705.1ContigJAWZMJ000000000SAMN37770871
S_1069
GCA_034150985.1ContigJAWZMD000000000SAMN37770864
S_1062
GCA_034151285.1ContigJAWZLZ000000000SAMN37770860
S_1058
GCA_034150465.1ContigJAWZMQ000000000SAMN37770878
S_1076
GCA_034150225.1ContigJAWZNA000000000SAMN37770888
S_1086
GCA_034150205.1ContigJAWZNC000000000SAMN37770890
S_1088
GCA_034149425.1ContigJAWZOP000000000SAMN37770934
S_1132
GCA_034149405.1ContigJAWZOO000000000SAMN37770933
S_1131
GCA_034149785.1ContigJAWZNV000000000SAMN37770911
S_1109
GCA_034149845.1ContigJAWZNT000000000SAMN37770909
S_1107
GCA_034149465.1ContigJAWZOM000000000SAMN37770931
S_1129
GCA_034149365.1ContigJAWZOR000000000SAMN37770936
S_1134
GCA_034147205.1ContigJAWZRP000000000SAMN37771015
S_1213
GCA_034147525.1ContigJAWZQZ000000000SAMN37770999
S_1197
GCA_034147505.1ContigJAWZRC000000000SAMN37771002
S_1200
GCA_034147725.1ContigJAWZQQ000000000SAMN37770989
S_1187
GCA_034147665.1ContigJAWZQS000000000SAMN37770992
S_1190
GCA_034148225.1ContigJAWZPV000000000SAMN37770967
S_1165
GCA_034148445.1ContigJAWZPP000000000SAMN37770961
S_1159
GCA_034148325.1ContigJAWZPS000000000SAMN37770964
S_1162
GCA_034148545.1ContigJAWZPM000000000SAMN37770958
S_1156
GCA_034148525.1ContigJAWZPO000000000SAMN37770960
S_1158
GCA_034144705.1ScaffoldJAWZBE000000000SAMN37770405
S_770
GCA_034145065.1ScaffoldJAWZKN000000000SAMN37770654
S_1019
GCA_034145665.1ScaffoldJAWZJJ000000000SAMN37770623
S_988
GCA_034146125.1ScaffoldJAWZIY000000000SAMN37770612
S_977
GCA_034147465.1ContigJAWZRA000000000SAMN37771000
S_1198
GCA_034146985.1ContigJAWZRU000000000SAMN37771020
S_1218
GCA_034146845.1ContigJAWZRY000000000SAMN37771025
S_1223
GCA_034146615.1ContigJAWZSC000000000SAMN37771029
S_1227
GCA_034142805.1ContigJAWZDK000000000SAMN37770463
S_828
GCA_034141925.1ScaffoldJAWZEI000000000SAMN37770487
S_852
GCA_034141785.1ScaffoldJAWZEM000000000SAMN37770491
S_856
GCA_034126785.1ScaffoldJAWYRY000000000SAMN37770116
S_524
GCA_034128265.1ScaffoldJAWYOU000000000SAMN37770033
S_441
GCA_034127005.1ScaffoldJAWYRS000000000SAMN37770110
S_518
GCA_034129685.1ContigJAWYMB000000000SAMN37769060
S_369
GCA_034124205.1ScaffoldJAWYBO000000000SAMN37768775
S_84
GCA_034121785.1ScaffoldJAWYFR000000000SAMN37768884
S_193
GCA_034122225.1ScaffoldJAWYEV000000000SAMN37768860
S_169
GCA_034122045.1ContigJAWYFE000000000SAMN37768869
S_178
GCA_034122005.1ScaffoldJAWYFH000000000SAMN37768872
S_181
GCA_034122065.1ScaffoldJAWYFD000000000SAMN37768868
S_177
GCA_034121965.1ScaffoldJAWYFI000000000SAMN37768873
S_182
GCA_034122245.1ScaffoldJAWYEU000000000SAMN37768859
S_168
GCA_034122625.1ScaffoldJAWYEA000000000SAMN37768839
S_148
GCA_034122785.1ScaffoldJAWYDT000000000SAMN37768832
S_141
GCA_034122765.1ScaffoldJAWYDV000000000SAMN37768834
S_143
GCA_034122685.1ScaffoldJAWYDY000000000SAMN37768837
S_146
GCA_034124285.1ScaffoldJAWYBJ000000000SAMN37768770
S_79
GCA_034123865.1ContigJAWYCD000000000SAMN37768790
S_99
GCA_034124005.1ScaffoldJAWYBZ000000000SAMN37768786
S_95
GCA_034123945.1ScaffoldJAWYCA000000000SAMN37768787
S_96
GCA_034123705.1ScaffoldJAWYCO000000000SAMN37768801
S_110
GCA_034123765.1ContigJAWYCI000000000SAMN37768795
S_104
GCA_034122945.1ScaffoldJAWYDL000000000SAMN37768824
S_133
GCA_034123365.1ScaffoldJAWYCZ000000000SAMN37768812
S_121
GCA_034123005.1ScaffoldJAWYDJ000000000SAMN37768822
S_131
GCA_034123665.1ScaffoldJAWYCM000000000SAMN37768799
S_108
GCA_034123565.1ScaffoldJAWYCU000000000SAMN37768807
S_116
GCA_034123265.1ContigJAWYDB000000000SAMN37768814
S_123
GCA_034123225.1ScaffoldJAWYDD000000000SAMN37768816
S_125
GCA_034121265.1ScaffoldJAWYGN000000000SAMN37768909
S_218
GCA_034121095.1ScaffoldJAWYGQ000000000SAMN37768912
S_221
GCA_034121675.1ScaffoldJAWYFW000000000SAMN37768889
S_198
GCA_034129905.1ScaffoldJAWYLR000000000SAMN37769050
S_359
GCA_034129645.1ScaffoldJAWYMD000000000SAMN37769062
S_371
GCA_034129625.1ScaffoldJAWYMF000000000SAMN37769064
S_373
GCA_034129545.1ContigJAWYMI000000000SAMN37769067
S_376
GCA_034129465.1ScaffoldJAWYMM000000000SAMN37769972
S_380
GCA_034129365.1ScaffoldJAWYMR000000000SAMN37769977
S_385
GCA_034127365.1ScaffoldJAWYRJ000000000SAMN37770101
S_509
GCA_034127795.1ScaffoldJAWYRC000000000SAMN37770094
S_502
GCA_034127915.1ScaffoldJAWYQU000000000SAMN37770086
S_494
GCA_034128125.1ScaffoldJAWYPB000000000SAMN37770041
S_449
GCA_034128505.1ScaffoldJAWYOI000000000SAMN37770021
S_429
GCA_034128385.1ContigJAWYOO000000000SAMN37770027
S_435
GCA_034128665.1ScaffoldJAWYOA000000000SAMN37770012
S_420
GCA_034127085.1ScaffoldJAWYRR000000000SAMN37770109
S_517
GCA_034126765.1ContigJAWYRZ000000000SAMN37770117
S_525
GCA_034126575.1ScaffoldJAWYSD000000000SAMN37770121
S_529
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S_533
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S_549
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S_553
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S_559
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S_7
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S_8
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S_9
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S_73
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S_70
GCA_034124725.1ScaffoldJAWYAN000000000SAMN37768748
S_57
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S_62
GCA_034124905.1ScaffoldJAWYAD000000000SAMN37768738
S_47
GCA_034125465.1ScaffoldJAWXZP000000000SAMN37768724
S_33
GCA_034125085.1ScaffoldJAWYAA000000000SAMN37768735
S_44
GCA_034125625.1ScaffoldJAWXZD000000000SAMN37768712
S_21
GCA_034125505.1ScaffoldJAWXZM000000000SAMN37768721
S_30
GCA_034142005.1ScaffoldJAWZEG000000000SAMN37770485
S_850
GCA_034142605.1ScaffoldJAWZDT000000000SAMN37770472
S_837
GCA_034142305.1ScaffoldJAWZDZ000000000SAMN37770478
S_843
GCA_034141555.1ScaffoldJAWZEQ000000000SAMN37770495
S_860
GCA_034141385.1ScaffoldJAWZEW000000000SAMN37770501
S_866
GCA_034142785.1ScaffoldJAWZDL000000000SAMN37770464
S_829
GCA_034142825.1ScaffoldJAWZDI000000000SAMN37770461
S_826
GCA_034142665.1ScaffoldJAWZDP000000000SAMN37770468
S_833
GCA_034143165.1ScaffoldJAWZCO000000000SAMN37770441
S_806
GCA_034143145.1ScaffoldJAWZCT000000000SAMN37770446
S_811
GCA_034143105.1ContigJAWZCX000000000SAMN37770450
S_815
GCA_034143865.1ScaffoldJAWZCB000000000SAMN37770428
S_793
GCA_034143585.1ScaffoldJAWZCI000000000SAMN37770435
S_800
GCA_034143405.1ScaffoldJAWZCN000000000SAMN37770440
S_805
GCA_034146325.1ScaffoldJAWZIM000000000SAMN37770600
S_965
GCA_034146525.1ScaffoldJAWZII000000000SAMN37770595
S_960
GCA_034145935.1ScaffoldJAWZJB000000000SAMN37770615
S_980
GCA_034145705.1ScaffoldJAWZJG000000000SAMN37770620
S_985
GCA_034145645.1ScaffoldJAWZJK000000000SAMN37770624
S_989
GCA_034145465.1ScaffoldJAWZJR000000000SAMN37770631
S_996
GCA_034145345.1ContigJAWZJX000000000SAMN37770637
S_1002
GCA_034145325.1ScaffoldJAWZKB000000000SAMN37770641
S_1006
GCA_034144965.1ScaffoldJAWZBA000000000SAMN37770401
S_766
GCA_034144645.1ScaffoldJAWZBH000000000SAMN37770408
S_773
GCA_034144545.1ScaffoldJAWZBJ000000000SAMN37770410
S_775
GCA_034144205.1ScaffoldJAWZBR000000000SAMN37770418
S_783
GCA_034148695.1ContigJAWZPJ000000000SAMN37770955
S_1153
GCA_034147985.1ContigJAWZQA000000000SAMN37770972
S_1170
GCA_034147645.1ContigJAWZQT000000000SAMN37770993
S_1191
GCA_034128005.1ScaffoldJAWYQR000000000SAMN37770083
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