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Genome Information for Hydrolagus colliei
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The spotted ratfish (Hydrolagus colliei) is a chimaera found in the north-eastern Pacific Ocean, often seen by divers at night in the Pacific Northwest This cartilaginous fish gets its characteristic name from a pointed rat-like tail. (modified from Wikipedia entry). This sample is from a male collected in Whitewater Bay, Alaska, by Karly Cohen of Friday Harbor Labs, and coordinated by Gavin Naylor to be used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA1061195 |
| Type | Umbrella project |
| Organism | Hydrolagus colliei[Taxonomy ID: 7873] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Chimaeridae; Hydrolagus; Hydrolagus colliei |
| Submission | Registration date: 4-Jan-2024
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 82 |
| WGS master | 2 |
| SRA Experiments | 9 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
2
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1058005 | Chromosomes | Hydrolagus colliei | Hydrolagus colliei (spotted ratfish) genome, sHydCol1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1058004 | Chromosomes | Hydrolagus colliei | Hydrolagus colliei (spotted ratfish) genome, sHydCol1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1149714 | SRA or Trace | Hydrolagus colliei (spotted ratfish) genome, sHydCol1, sequence data | Hydrolagus colliei (spotted ratfish) genome, sHydCol1, sequence data (Vertebrate Genomes Project) |
|