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Genome Information for Ammospiza maritima
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The seaside sparrow (Ammospiza maritima) is a species of American sparrow. Their breeding habitat is salt marshes on the Atlantic and Gulf coasts of the United States from southern New Hampshire to southern Texas (from Wikipedia entry). This sample was collected by Chris Elphick from Barn Island Wildlife Management Area in Stonington, Connecticut, USA and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The project was coordinated by Adrienne Kovach and Lindsey Fenderson of the University of New Hampshire. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA1061555 |
| Type | Umbrella project |
| Organism | Ammospiza maritima maritima[Taxonomy ID: 3111550] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Ammospiza; Ammospiza maritima; Ammospiza maritima maritima |
| Submission | Registration date: 5-Jan-2024
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 42 |
| WGS master | 2 |
| SRA Experiments | 16 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
1
1
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1060856 | Chromosomes | Ammospiza maritima maritima | Ammospiza maritima maritima (seaside sparrow) genome, bAmmMai1, primary haplotype (Vertebrate Genomes Project) | | PRJNA1060855 | Scaffolds | Ammospiza maritima maritima | Ammospiza maritima maritima (seaside sparrow) genome, bAmmMai1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1147611 | SRA or Trace | Ammospiza maritima maritima (seaside sparrow) genome, bAmmMai1, sequence data | Ammospiza maritima maritima (seaside sparrow) genome, bAmmMai1, sequence data (Vertebrate Genomes Project) |
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