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Genome Information for Apteryx mantelli
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The North Island brown kiwi (Apteryx mantelli) is a species of kiwi that is widespread in the northern two-thirds of the North Island of New Zealand. It is the most common kiwi. It holds the world's record for laying the largest eggs relative to its body size (modified from Wikipedia entry). This sample of male was collected by the veterinary team at the Smithsonian's National Zoo & Conservation Biology Institute, and coordinated by Klaus-Peter Koepfli to be used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
| Accession | PRJNA1063290 |
| Type | Umbrella project |
| Organism | Apteryx mantelli[Taxonomy ID: 2696672] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx; Apteryx mantelli |
| Submission | Registration date: 10-Jan-2024
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 40345 |
| WGS master | 2 |
| Transcript | 39805 |
| SRA Experiments | 13 |
| Protein Sequences | 34071 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
3
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1061176 | Chromosomes | Apteryx mantelli | Apteryx mantelli (North Island brown kiwi) genome, bAptMan1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1061175 | Chromosomes | Apteryx mantelli | Apteryx mantelli (North Island brown kiwi) genome, bAptMan1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1142514 | Chromosomes | Apteryx mantelli | Apteryx mantelli isolate:bAptMan1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1140159 | SRA or Trace | Apteryx mantelli (North Island brown kiwi) genome, bAptMan1, sequence data | Apteryx mantelli (North Island brown kiwi) genome, bAptMan1, sequence data (Vertebrate Genomes Project) |
|