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The Threatened Species Initiative (https://bioplatforms.com/projects/threatened-species/) A collaborative partnership to develop genomic resources, analytical pipelines and reporting methods in support of conserving Australia’s threatened biodiversity. Bioplatforms Australia is enabled by the Commonwealth Government National Collaborative Research Infrastructure Strategy (NCRIS).
| Accession | PRJNA1075750 |
| Type | Umbrella project |
| Submission | Registration date: 12-Feb-2024
Bioplatforms Australia |
| Relevance | Environmental |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 156 |
| WGS master | 71 |
| Genomic DNA | 80 |
| SRA Experiments | 296 |
| Protein Sequences | 1041 |
| Publications |
| PubMed | 2 |
| PMC | 1 |
| Other datasets |
| BioSample | 319 |
| PopSet | 2 |
| Assembly | 71 |
This project encompasses the following 17 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
5
10
2
17
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1044448 | Contigs | Acanthiza pusilla | Acanthiza pusilla Genome sequencing and assembly (The University of Sydney) | | PRJNA1014961 | Contigs | Acanthornis magna | Genome and transcriptome sequence of the Tasmanian scrubtit (The University of Sydney) | | PRJNA1145263 | Contigs | Anthochaera phrygia | Anthochaera phrygia Genome sequencing (The University of Sydney) | | PRJNA924831 | Contigs | Cryptoblepharus egeriae | Genome and transcriptome sequencing of the Christmas Island blue-tailed skink (Cryptoblepharus egeriae) (Threatened Species Initiative) | | PRJNA898089 | Scaffolds | Fish | Reference sequences for Australian freshwater fishes: Genome sequencing and assembly (CSIRO Applied Genomics Initiative) | | PRJNA986602 | SRA or Trace | Genome sequencing of Gossia gonoclada | Genome sequencing of Gossia gonoclada (Botanic Gardens of Sydney) | | PRJNA884486 | Contigs | Genome sequencing of Lenwebbia sp. Main Range | Genome sequencing of Lenwebbia sp. Main Range (University of New South Wales) | | PRJNA1021263 | Contigs | Lathamus discolor | Lathamus discolor Genome sequencing (The University of Sydney) | | PRJNA926684 | Scaffolds | Lepidodactylus listeri | Genome and transcriptome sequencing and assembly of the Lister's gecko (Lepidodactylus listeri) (Threatened Species Initiative) | | PRJNA991157 | Scaffolds | Mixophyes australis | Mixophyes australis Genome sequencing and assembly (The University of Sydney) | | PRJNA729818 | SRA or Trace | Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement | Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement (Oz Mammals Genomics Consortium) | | PRJNA1003540 | Scaffolds | Myuchelys georgesi | Myuchelys georgesi Genome sequencing (The University of Sydney) | | PRJNA1036367 | Contigs | Pezoporus flaviventris | Pezoporus flaviventris isolate:CSIRO_AGI_PZ_B2104156 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) | | PRJNA1044171 | Contigs | Pezoporus occidentalis | Pezoporus occidentalis Genome sequencing and assembly (CSIRO Applied Genomics Initiative) | | PRJNA735913 | Scaffolds | Rhodamnia rubescens | Rhodamnia rubescens genome sequencing and assembly (University of New South Wales) | | PRJNA735915 | Contigs | Rhodomyrtus psidioides | Rhodomyrtus psidioides genome sequencing and assembly (Threatened Species Initiative) | | PRJNA954521 | Contigs | Taudactylus pleione | Taudactylus pleione Genome sequencing and assembly (Threatened Species Initiative) |
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