Resistance to antimicrobial medicines (antimicrobial resistance, AMR) is an important public health challenge. In particular, the development of resistance to antimicrobials by bacterial and fungal pathogens that were formerly sensitive poses a great threat to human and animal health. The GRDI AMR project maps the development and transit of AMR through healthcare, animals, plants, wastewater and the environment. Genomics approaches including metagenomics, whole-genome sequencing and genomic epidemiology are applied to inform strategies for reducing the spread of AMR https://grdi.canada.ca/en
| Accession | PRJNA1076250 |
| Type | Umbrella project |
| Grants | - "The GRDI Shared priority project on antimicrobial resistance, One Health" (Grant ID GRDI-AMR-One-Health, Government of Canada, Genomics Research and Development Initiative (GRDI))
|
| Submission | Registration date: 13-Feb-2024
GRDI Shared Priorities Project on AMR |
| Relevance | One Health: Agricultural, Environmental, Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (WGS master) | 3 |
| SRA Experiments | 2877 |
| Publications |
| PubMed | 3 |
| PMC | 3 |
| Other datasets |
| BioSample | 2878 |
| Assembly | 3 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Contigs SRA or Trace No data links Total |
1
3
1
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1069227 | Contigs | Aeromonas salmonicida from Alberta | Aeromonas salmonicida from Alberta (McGill University) | | PRJNA966974 | SRA or Trace | Canadian Microbiological Baseline Study of Broiler Chicken | Canadian Microbiological Baseline Study of Broiler Chicken (Canadian Food Inspection...) | | PRJNA1163406 | SRA or Trace | Clostridioides difficile | Clostridioides difficile from Canadian retail meat (Government of Canada) | | PRJNA1070647 | SRA or Trace | ESKAPEE Pathogens from Foods | ESKAPEE Pathogens from Foods (Canadian Food Inspection...) | | PRJNA1143549 | No data links | Enterobacteriaceae | Impact of in-feed cranberry by-products and fresh alfalfa silage exposition on sow and piglet gut microbiome and AMR profile (Governement of Canada) |
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