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Genome Information for Solanum lycopersicum
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To investigate the role of Serine/Arginine-rich proteins RS2Z35 and RS2Z36 in tomato heat stress response and thermotolerance, we established single and double knockouts of the respective splicing factor(s) in tomato
We then performed gene expression and splicing analysis using data obtained from RNA-seq of wildtype, single knockout and double knockout plants under control and heat stress conditions (1 h 40°C)
Overall design: Differential gene expression analysis of RNA-seq data for RS2Z protein knockout plants compared to WT, under control and heat stress conditions. 3 biological replicates each
| Accession | PRJNA1089146; GEO: GSE261816 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Solanum lycopersicum[Taxonomy ID: 4081] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon; Solanum lycopersicum |
| Publications | Rosenkranz RRE et al., "A plant-specific clade of serine/arginine-rich proteins regulates RNA splicing homeostasis and thermotolerance in tomato.", Nucleic Acids Res, 2024 Oct 28;52(19):11466-11480 |
| Submission | Registration date: 18-Mar-2024
Goethe University Frankfurt |
| Relevance | Agricultural |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 24 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 24 |
| GEO DataSets | 1 |