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Genome Information for Cyprinella venusta
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The blacktail shiner (Cyprinella venusta) is a small freshwater fish in the family Cyprinidae native to the United States, found in the southern United States west of the Appalachian Mountains (from Wikipedia entry). This sample of a male adult individual found in Oklahoma, USA, was procured by Richard Broughton, Fernando Melendez, Melissa Rincon-Sandoval, Sarah Ward, Dahiana Arcila, and Ricardo Betancur to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
Accession | PRJNA1095481 |
Type | Umbrella project |
Organism | Cyprinella venusta[Taxonomy ID: 28792] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Cyprinella; Cyprinella venusta |
Submission | Registration date: 2-Apr-2024 Vertebrate Genomes Project |
Relevance | Reference Genome |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 53 |
WGS master | 2 |
SRA Experiments | 9 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 1 |
Assembly | 2 |
This project encompasses the following 3 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total | 2 1 3
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BioProject accession | Assembly level | Name | Title |
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PRJNA1093102 | Chromosomes | Cyprinella venusta | Cyprinella venusta (blacktail shiner) genome, fCypVen1, haplotype 2 (Vertebrate Genomes Project) | PRJNA1093101 | Chromosomes | Cyprinella venusta | Cyprinella venusta (blacktail shiner) genome, fCypVen1, haplotype 1 (Vertebrate Genomes Project) | PRJNA1139355 | SRA or Trace | Cyprinella venusta (blacktail shiner) genome, fCypVen1, sequence data | Cyprinella venusta (blacktail shiner) genome, fCypVen1, sequence data (Vertebrate Genomes Project) |
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