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Accession: PRJNA1095481 ID: 1095481

Cyprinella venusta (blacktail shiner) genome, fCypVen1

See Genome Information for Cyprinella venusta
The blacktail shiner (Cyprinella venusta) is a small freshwater fish in the family Cyprinidae native to the United States, found in the southern United States west of the Appalachian Mountains (from Wikipedia entry). This sample of a male adult individual found in Oklahoma, USA, was procured by Richard Broughton, Fernando Melendez, Melissa Rincon-Sandoval, Sarah Ward, Dahiana Arcila, and Ricardo Betancur to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
AccessionPRJNA1095481
TypeUmbrella project
OrganismCyprinella venusta[Taxonomy ID: 28792]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Cyprinella; Cyprinella venusta
SubmissionRegistration date: 2-Apr-2024
Vertebrate Genomes Project
RelevanceReference Genome
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)53
WGS master2
SRA Experiments9
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases216
Data volume, Tbytes0.10
This project encompasses the following 3 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
SRA or Trace
Total

2
1
3
BioProject
accession
Assembly
level
NameTitle
PRJNA1093102 ChromosomesCyprinella venustaCyprinella venusta (blacktail shiner) genome, fCypVen1, haplotype 2 (Vertebrate Genomes Project)
PRJNA1093101 ChromosomesCyprinella venustaCyprinella venusta (blacktail shiner) genome, fCypVen1, haplotype 1 (Vertebrate Genomes Project)
PRJNA1139355 SRA or TraceCyprinella venusta (blacktail shiner) genome, fCypVen1, sequence dataCyprinella venusta (blacktail shiner) genome, fCypVen1, sequence data (Vertebrate Genomes Project)

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