This umbrella BioProject consolidates multiple sequencing initiatives by US federal agencies, specifically targeting non-wild type isolates of enteric bacteria. It encompasses whole genome sequences from proficiency test isolates, certification isolates, laboratory control strains, reference datasets, and validation isolates. Data generated from these efforts are crucial to the quality assurance and quality control processes that underpin public health decision-making in the surveillance and control of foodborne pathogens.
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 42 |
| SRA Experiments | 1805 |
| Protein Sequences | 77698 |
| Other datasets |
| BioSample | 965 |
| Assembly | 18 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : SRA or Trace |
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1101017 | SRA or Trace | GenomeTrakr WGS Validation Strain Set | GenomeTrakr WGS Validation Strain Set (FDA Center for Food Safety...) | | PRJNA981165 | SRA or Trace | Microbiology Laboratory Reference and Control Strain Database | Microbiology Laboratory Reference and Control Strain Database (FDA Center for Food Safety...) | | PRJNA1075815 | SRA or Trace | bacteria | Assessing Within-Sample Genetic Diversity of Bacterial Foodborne Pathogens (GenomeTrakr) |
|
| Umbrella project | 1 |
BioProject
accession | Name | Title |
|---|
| PRJNA504454 | Gen-FS proficiency tests across the PulseNet/GenomeTrakr networks | Gen-FS proficiency tests across the PulseNet/GenomeTrakr networks (FDA Center for Food Safety...) |
|