Campylobacter (ID 1106832) - BioProject

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Accession: PRJNA1106832 ID: 1106832

Campylobacter

Layer chicken Campylobacter jejuni and Campylobacter coli Assembly

Campylobacter species from table-egg layer chickens and their environment to compare to isolates from broiler chickens

Accession	PRJNA1106832
Data Type	Genome sequencing
Scope	Multispecies
Grants	"Intervention Strategies to Control Salmonella and Campylobacter During Poultry Processing" (Grant ID 6040-32000-085-000-D, USDA Agricultural Research Service)
Submission	Registration date: 1-May-2024 Agricultural Research Service
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	65
SRA Experiments	65
Other datasets
BioSample	65
Assembly	65

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

65
65

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_039677625.1	JBDHOY000000000	SAMN41233144	FECAL_5525-1_1	Campylobacter coli
GCA_039652355.1	JBDHNL000000000	SAMN41233105	11-DS-1_1	Campylobacter coli
GCA_039652295.1	JBDHNN000000000	SAMN41233107	11-DS-2_1	Campylobacter coli
GCA_039652155.1	JBDHNT000000000	SAMN41233113	12-DS-1_1	Campylobacter coli
GCA_039652135.1	JBDHNU000000000	SAMN41233114	12-DS-2_1	Campylobacter coli
GCA_039652115.1	JBDHNW000000000	SAMN41233116	13-DS-4-CF_1	Campylobacter coli
GCA_039652095.1	JBDHNX000000000	SAMN41233117	13-MSU_M1R1_1	Campylobacter coli
GCA_039652195.1	JBDHNP000000000	SAMN41233109	11-DS-3_1	Campylobacter coli
GCA_039652055.1	JBDHNZ000000000	SAMN41233119	13-MSU_M1T2_1	Campylobacter coli
GCA_039652015.1	JBDHOA000000000	SAMN41233120	13-MSU_M1T3_1	Campylobacter coli
GCA_039651995.1	JBDHOC000000000	SAMN41233122	13-MSU_M3C3_1	Campylobacter coli
GCA_039651975.1	JBDHOE000000000	SAMN41233124	BMF1-1_2	Campylobacter coli
GCA_039651955.1	JBDHOD000000000	SAMN41233123	BMF1-1_1	Campylobacter coli
GCA_039651935.1	JBDHOF000000000	SAMN41233125	BMF1-2_1	Campylobacter coli
GCA_039651885.1	JBDHOG000000000	SAMN41233126	BMF1-2_2	Campylobacter coli
GCA_039651855.1	JBDHOH000000000	SAMN41233127	BMF1-4_1	Campylobacter coli
GCA_039651865.1	JBDHOI000000000	SAMN41233128	BMF1-4_2	Campylobacter coli
GCA_039651575.1	JBDHOW000000000	SAMN41233142	FECAL_5523-1_4	Campylobacter coli
GCA_039651545.1	JBDHOZ000000000	SAMN41233145	FECAL_5525-2_1	Campylobacter coli
GCA_039651535.1	JBDHOX000000000	SAMN41233143	FECAL_5523-2_1	Campylobacter coli
GCA_039651525.1	JBDHPA000000000	SAMN41233146	FECAL_5525-2_2	Campylobacter coli
GCA_039651515.1	JBDHPC000000000	SAMN41233148	FECAL_5611-1_2	Campylobacter coli
GCA_039651475.1	JBDHPD000000000	SAMN41233149	FECAL_R12-2_1	Campylobacter coli
GCA_039651685.1	JBDHOV000000000	SAMN41233141	FECAL_5523-1_3	Campylobacter coli
GCA_039651655.1	JBDHOS000000000	SAMN41233138	FECAL_431-2_1	Campylobacter coli
GCA_039651625.1	JBDHOT000000000	SAMN41233139	FECAL_5523-1_1	Campylobacter coli
GCA_039651635.1	JBDHOU000000000	SAMN41233140	FECAL_5523-1_2	Campylobacter coli
GCA_039651395.1	JBDHPF000000000	SAMN41233151	M2TII_MSU-AM_1	Campylobacter coli
GCA_039651385.1	JBDHPG000000000	SAMN41233152	M2UII_MSU-AM_1	Campylobacter coli
GCA_039651315.1	JBDHPK000000000	SAMN41233156	M3T2_MSU-AM_1	Campylobacter coli
GCA_039651165.1	JBDHPS000000000	SAMN41233164	SS_1-3_MITE_1	Campylobacter coli
GCA_039651135.1	JBDHPV000000000	SAMN41233167	SS_3-3_1	Campylobacter coli
GCA_039651125.1	JBDHPT000000000	SAMN41233165	SS_2-4_1	Campylobacter coli
GCA_039651115.1	JBDHPU000000000	SAMN41233166	SS_2-4_MITE_1	Campylobacter coli
GCA_039651095.1	JBDHPW000000000	SAMN41233168	SS_3-4_1	Campylobacter coli
GCA_039651075.1	JBDHPX000000000	SAMN41233169	SS_4-1_1	Campylobacter coli
GCA_039651225.1	JBDHPO000000000	SAMN41233160	M4CII_MSU-AM_1	Campylobacter coli
GCA_039651215.1	JBDHPP000000000	SAMN41233161	NB_4-1_1	Campylobacter coli
GCA_039651195.1	JBDHPR000000000	SAMN41233163	SS_1-2_1	Campylobacter jejuni
GCA_039651305.1	JBDHPM000000000	SAMN41233158	M3T8_MSU-AM_1	Campylobacter jejuni
GCA_039651285.1	JBDHPN000000000	SAMN41233159	M3TII_MSU-AM_1	Campylobacter jejuni
GCA_039651275.1	JBDHPL000000000	SAMN41233157	M3T2_MSU-AM_2	Campylobacter jejuni
GCA_039651245.1	JBDHPQ000000000	SAMN41233162	SS_1-1_1	Campylobacter jejuni
GCA_039651375.1	JBDHPH000000000	SAMN41233153	M3CII_MSU-AM_1	Campylobacter jejuni
GCA_039651355.1	JBDHPJ000000000	SAMN41233155	M3CS_MSU-AM_1	Campylobacter jejuni
GCA_039651615.1	JBDHOR000000000	SAMN41233137	F1-3_2	Campylobacter jejuni
GCA_039651485.1	JBDHPB000000000	SAMN41233147	FECAL_5611-1_1	Campylobacter jejuni
GCA_039651445.1	JBDHPE000000000	SAMN41233150	M2C2_MSU-AM_1	Campylobacter jejuni
GCA_039651435.1	JBDHPI000000000	SAMN41233154	M3CII_MSU-AM_2	Campylobacter jejuni
GCA_039651835.1	JBDHOK000000000	SAMN41233130	DS_1-2-M2_1	Campylobacter jejuni
GCA_039651815.1	JBDHOL000000000	SAMN41233131	DS_1-4-M2_1	Campylobacter jejuni
GCA_039651745.1	JBDHOQ000000000	SAMN41233136	F1-3_1	Campylobacter jejuni
GCA_039651775.1	JBDHON000000000	SAMN41233133	F1-1_2	Campylobacter jejuni
GCA_039651735.1	JBDHOM000000000	SAMN41233132	F1-1_1	Campylobacter jejuni
GCA_039651755.1	JBDHOO000000000	SAMN41233134	F1-2_1	Campylobacter jejuni
GCA_039651715.1	JBDHOP000000000	SAMN41233135	F1-2_2	Campylobacter jejuni
GCA_039651905.1	JBDHOJ000000000	SAMN41233129	DS_1-10_1	Campylobacter jejuni
GCA_039652035.1	JBDHOB000000000	SAMN41233121	13-MSU_M3C2_1	Campylobacter jejuni
GCA_039652175.1	JBDHNV000000000	SAMN41233115	12-DS-2_CAT_1	Campylobacter jejuni
GCA_039652075.1	JBDHNY000000000	SAMN41233118	13-MSU_M1R6_1	Campylobacter jejuni
GCA_039652275.1	JBDHNO000000000	SAMN41233108	11-DS-2_2	Campylobacter jejuni
GCA_039652255.1	JBDHNS000000000	SAMN41233112	11-DS-4_1	Campylobacter jejuni
GCA_039652235.1	JBDHNQ000000000	SAMN41233110	11-DS-3_2	Campylobacter jejuni
GCA_039652215.1	JBDHNR000000000	SAMN41233111	11-DS-3_3	Campylobacter jejuni
GCA_039652335.1	JBDHNM000000000	SAMN41233106	11-DS-1_2	Campylobacter jejuni

SRA Data Details

Parameter	Value
Data volume, Gbases	12
Data volume, Mbytes	5827

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Campylobacter

Layer chicken Campylobacter jejuni and Campylobacter coli Assembly

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