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Genome Information for Ascaphus truei
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The tailed frog (Ascaphus truei) is one of two species of frogs in the genus Ascaphus, the only taxon in the family Ascaphidae. The tail is one of two distinctive anatomical features adapting the species to life in fast-flowing streams. The two species are the only North American frog species that reproduce by internal fertilization (from Wikipedia entry). This sample of a male individual found at the Luckiamute River in Polk County, Oregon, USA, was coordinated by Gwendolynn W. Bury (Oregon State University) and R. Bruce Bury (U.S. Geological Survey) to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The individual was collected by Mark Leppin (Oregon State University) under Oregon Scientific Permit #114-20, and the sample was dissected by Adam Leache (University of Washington).
More...The tailed frog (Ascaphus truei) is one of two species of frogs in the genus Ascaphus, the only taxon in the family Ascaphidae. The tail is one of two distinctive anatomical features adapting the species to life in fast-flowing streams. The two species are the only North American frog species that reproduce by internal fertilization (from Wikipedia entry). This sample of a male individual found at the Luckiamute River in Polk County, Oregon, USA, was coordinated by Gwendolynn W. Bury (Oregon State University) and R. Bruce Bury (U.S. Geological Survey) to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The individual was collected by Mark Leppin (Oregon State University) under Oregon Scientific Permit #114-20, and the sample was dissected by Adam Leache (University of Washington). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
Less...Accession | PRJNA1108278 |
Type | Umbrella project |
Organism | Ascaphus truei[Taxonomy ID: 8439] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Ascaphidae; Ascaphus; Ascaphus truei |
Submission | Registration date: 6-May-2024 Vertebrate Genomes Project |
Relevance | Reference Genome |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 48 |
WGS master | 2 |
SRA Experiments | 21 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 1 |
Assembly | 2 |
This project encompasses the following 3 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total | 2 1 3
|
BioProject accession | Assembly level | Name | Title |
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PRJNA1106995 | Chromosomes | Ascaphus truei | Ascaphus truei (tailed frog) genome, aAscTru1, haplotype 1 (Vertebrate Genomes Project) | PRJNA1106993 | Chromosomes | Ascaphus truei | Ascaphus truei (tailed frog) genome, aAscTru1, haplotype 2 (Vertebrate Genomes Project) | PRJNA1147609 | SRA or Trace | Ascaphus truei (tailed frog) genome, aAscTru1, sequence data | Ascaphus truei (tailed frog) genome, aAscTru1, sequence data (Vertebrate Genomes Project) |
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