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Accession: PRJNA1112839 ID: 1112839

Pseudorca crassidens (false killer whale) genome, mPseCra1

See Genome Information for Pseudorca crassidens
False killer whales are social animals found globally in all tropical and subtropical oceans and generally in deep offshore waters. The false killer whale's entire body is black or dark gray, although lighter areas may occur ventrally (on its underside) between the flippers or on the sides of the head. Fishery interactions are one of the main threats facing this species. False killer whales are known to depredate (take fish and bait off of fishing lines), which can lead to hooking and/or entanglement. This is especially a concern for false killer whales that interact with the Hawai'i longline fishery (NOAA website).The tissue sample was sent to the University of California, San Francisco from Cascadia Research Collective in Hawaii in 2019 in order to establish a cell line. More...
AccessionPRJNA1112839
TypeUmbrella project
OrganismPseudorca crassidens[Taxonomy ID: 82174]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Pseudorca; Pseudorca crassidens
SubmissionRegistration date: 17-May-2024
Vertebrate Genomes Project
RelevanceReference Genome
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)76466
WGS master2
Transcript75958
SRA Experiments17
Protein Sequences60728
Publications
PubMed1
PMC1
Other datasets
BioSample2
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases806
Data volume, Tbytes0.40
This project encompasses the following 5 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
SRA or Trace
Total

3
2
5
BioProject
accession
Assembly
level
NameTitle
PRJNA1108771 ChromosomesPseudorca crassidensPseudorca crassidens (false killer whale) genome, mPseCra1, haplotype 1 (Vertebrate Genomes Project)
PRJNA1108772 ChromosomesPseudorca crassidensPseudorca crassidens (false killer whale) genome, mPseCra1, haplotype 2 (Vertebrate Genomes Project)
PRJNA1150643 ChromosomesPseudorca crassidensPseudorca crassidens isolate:mPseCra1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA1139358 SRA or TracePseudorca crassidens (false killer whale) genome, mPseCra1, sequence dataPseudorca crassidens (false killer whale) genome, mPseCra1, sequence data (Vertebrate Genomes Project)
PRJNA1115126 SRA or TracePseudorca crassidens (false killer whale) transcriptome, mPseCra2Pseudorca crassidens (false killer whale) transcriptome, mPseCra2 (Vertebrate Genomes Project)

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