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Accession: PRJNA1126135 ID: 1126135

Avian Pathogenic Escherichia coli (APEC) -NGS sequencing and assembly

Colibacillosis is an important epidemiological and economic issue in poultry farming and breeding, however problematic is lack of common and uniform identification system of avian pathogenic Escherichia coli strains (APEC) that cause the disease. More...
AccessionPRJNA1126135
Data TypeGenome sequencing
ScopeMultispecies
Grants
  • "The integrated system for diagnostics and prevention of pathogenic E. coli infections in poultry flocks" (Grant ID POIR.01.01.01-00-0149/16, The National Centre for Research and Development)
SubmissionRegistration date: 20-Jun-2024
Proteon Pharmaceuticals
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)77
Other datasets
BioSample95
Assembly77
Assembly details:
Assembly levelNumber of Assemblies
77
77
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_040426445.1ContigJBEQZV000000000SAMN41922395
144PP2017
GCA_040436795.1ContigJBERAE000000000SAMN41922386
134PP2017
GCA_040437165.1ContigJBERCI000000000SAMN41922314
005PP2015
GCA_040437145.1ContigJBERBI000000000SAMN41922345
054PP2016
GCA_040351195.1ContigJBEQZW000000000SAMN41922394
143PP2017
GCA_040351145.1ContigJBEQZT000000000SAMN41922397
149PP2017
GCA_040352275.1ContigJBERCC000000000SAMN41922322
030PP2016
GCA_040352255.1ContigJBERCA000000000SAMN41922324
032PP2016
GCA_040352215.1ContigJBERBY000000000SAMN41922327
035PP2016
GCA_040352225.1ContigJBERBX000000000SAMN41922328
036PP2016
GCA_040352195.1ContigJBERBW000000000SAMN41922329
037PP2016
GCA_040352415.1ContigJBERCH000000000SAMN41922316
021PP2016
GCA_040352395.1ContigJBERCF000000000SAMN41922318
024PP2016
GCA_040352375.1ContigJBERCG000000000SAMN41922317
023PP2016
GCA_040352355.1ContigJBERCE000000000SAMN41922319
027PP2016
GCA_040352335.1ContigJBERCB000000000SAMN41922323
031PP2016
GCA_040352315.1ContigJBERBZ000000000SAMN41922325
033PP2016
GCA_040352295.1ContigJBERCD000000000SAMN41922321
029PP2016
GCA_040352155.1ContigJBERBV000000000SAMN41922330
038PP2016
GCA_040352175.1ContigJBERBU000000000SAMN41922331
039PP2016
GCA_040352135.1ContigJBERBS000000000SAMN41922334
043PP2016
GCA_040352115.1ContigJBERBT000000000SAMN41922333
041PP2016
GCA_040352095.1ContigJBERBR000000000SAMN41922335
044PP2016
GCA_040352075.1ContigJBERBO000000000SAMN41922338
047PP2016
GCA_040352035.1ContigJBERBP000000000SAMN41922337
046PP2016
GCA_040352055.1ContigJBERBQ000000000SAMN41922336
045PP2016
GCA_040352015.1ContigJBERBN000000000SAMN41922339
048PP2016
GCA_040351995.1ContigJBERBL000000000SAMN41922342
051PP2016
GCA_040351955.1ContigJBERAH000000000SAMN41922383
126PP2016
GCA_040351975.1ContigJBERAG000000000SAMN41922384
130PP2017
GCA_040351935.1ContigJBERBM000000000SAMN41922341
050PP2016
GCA_040351915.1ContigJBERBJ000000000SAMN41922344
053PP2016
GCA_040351895.1ContigJBERBK000000000SAMN41922343
052PP2016
GCA_040351875.1ContigJBERBH000000000SAMN41922346
057PP2016
GCA_040351855.1ContigJBERBG000000000SAMN41922347
059PP2016
GCA_040351835.1ContigJBERBF000000000SAMN41922348
062PP2016
GCA_040351815.1ContigJBERBE000000000SAMN41922349
063PP2016
GCA_040351795.1ContigJBERBB000000000SAMN41922359
077PP2016
GCA_040351765.1ContigJBERBC000000000SAMN41922356
074PP2016
GCA_040351755.1ContigJBERBD000000000SAMN41922354
070PP2016
GCA_040351735.1ContigJBERBA000000000SAMN41922361
079PP2016
GCA_040351715.1ContigJBERAY000000000SAMN41922363
081PP2016
GCA_040351695.1ContigJBERAZ000000000SAMN41922362
080PP2016
GCA_040351675.1ContigJBERAX000000000SAMN41922364
082PP2016
GCA_040351655.1ContigJBERAV000000000SAMN41922369
087PP2016
GCA_040351635.1ContigJBERAW000000000SAMN41922368
086PP2016
GCA_040351615.1ContigJBERAU000000000SAMN41922370
088PP2016
GCA_040351595.1ContigJBERAR000000000SAMN41922373
106PP2016
GCA_040351575.1ContigJBERAT000000000SAMN41922371
089PP2016
GCA_040351555.1ContigJBERAS000000000SAMN41922372
105PP2016
GCA_040351535.1ContigJBERAQ000000000SAMN41922374
107PP2016
GCA_040351515.1ContigJBERAO000000000SAMN41922376
110PP2016
GCA_040351495.1ContigJBERAP000000000SAMN41922375
108PP2016
GCA_040351475.1ContigJBERAN000000000SAMN41922377
113PP2016
GCA_040351455.1ContigJBERAM000000000SAMN41922378
114PP2016
GCA_040351435.1ContigJBERAL000000000SAMN41922379
120PP2016
GCA_040351415.1ContigJBERAK000000000SAMN41922380
121PP2016
GCA_040351395.1ContigJBERAI000000000SAMN41922382
124PP2016
GCA_040351375.1ContigJBERAJ000000000SAMN41922381
123PP2016
GCA_040351355.1ContigJBERAF000000000SAMN41922385
131PP2017
GCA_040351265.1ContigJBERAB000000000SAMN41922389
138PP2017
GCA_040351305.1ContigJBERAA000000000SAMN41922390
139PP2017
GCA_040351335.1ContigJBERAD000000000SAMN41922387
135PP2017
GCA_040351295.1ContigJBERAC000000000SAMN41922388
137PP2017
GCA_040351235.1ContigJBEQZZ000000000SAMN41922391
140PP2017
GCA_040351185.1ContigJBEQZX000000000SAMN41922393
142PP2017
GCA_040351245.1ContigJBEQZY000000000SAMN41922392
141PP2017
GCA_040351175.1ContigJBEQZU000000000SAMN41922396
147PP2017
GCA_040351135.1ContigJBEQZS000000000SAMN41922398
151PP2017
GCA_040351105.1ContigJBEQZR000000000SAMN41922399
152PP2017
GCA_040351075.1ContigJBEQZP000000000SAMN41922401
154PP2017
GCA_040351065.1ContigJBEQZQ000000000SAMN41922400
153PP2017
GCA_040351055.1ContigJBEQZO000000000SAMN41922402
155PP2016
GCA_040351025.1ContigJBEQZN000000000SAMN41922403
156PP2017
GCA_040351015.1ContigJBEQZL000000000SAMN41922405
158PP2017
GCA_040350975.1ContigJBEQZM000000000SAMN41922404
157PP2017
GCA_040350965.1ContigJBEQZK000000000SAMN41922406
159PP2017

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