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Genome Information for Hyperolius riggenbachi
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Riggenbach's reed frog (Hyperolius riggenbachi) is a species of frog in the family Hyperoliidae. It is found on Bamenda Highlands and the Adamawa Plateau, western and central Cameroon, and Mambilla and Obudu Plateaus of eastern Nigeria. Its natural habitats are wetlands and small wooded watercourses in montane grassland. This species is very common within its small range, but is threatened by habitat loss caused by agricultural activities, wood collection, and human settlement. This sample of a male individual captive born at the California Academy of Sciences was procured by Athena Lam to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
| Accession | PRJNA1137929 |
| Type | Umbrella project |
| Organism | Hyperolius riggenbachi[Taxonomy ID: 752182] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Microhyloidea; Hyperoliidae; Hyperolius; Hyperolius riggenbachi |
| Submission | Registration date: 19-Jul-2024
Vertebrate Genomes Project |
| Relevance | Reference Genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 63138 |
| WGS master | 2 |
| Transcript | 62635 |
| SRA Experiments | 20 |
| Protein Sequences | 50485 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
2
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1129093 | Chromosomes | Hyperolius riggenbachi | Hyperolius riggenbachi (Riggenbach's reed frog) genome, aHypRig1, primary haplotype (Vertebrate Genomes Project) | | PRJNA1129094 | Scaffolds | Hyperolius riggenbachi | Hyperolius riggenbachi (Riggenbach's reed frog) genome, aHypRig1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1153528 | Chromosomes | Hyperolius riggenbachi | Hyperolius riggenbachi (Riggenbach's reed frog) RefSeq BioProject (NCBI) | | PRJNA1144515 | SRA or Trace | Hyperolius riggenbachi (Riggenbach's reed frog) genome, aHypRig1, sequence data | Hyperolius riggenbachi (Riggenbach's reed frog) genome, aHypRig1, sequence data (Vertebrate Genomes Project) | | PRJNA1144516 | SRA or Trace | Hyperolius riggenbachi (Riggenbach's reed frog) genome, aHypRig1, transcriptome data | Hyperolius riggenbachi (Riggenbach's reed frog) genome, aHypRig1, transcriptome data (Vertebrate Genomes Project) |
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