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Accession: PRJNA1144444 ID: 1144444

Engystomops pustulosus (Tungara frog) genome, aEngPut4

See Genome Information for Engystomops pustulosus
The Tungara frog (Engystomops pustulosus) is a species in the Leptodactylidae family. It is a small nocturnal terrestrial frog found in Mexico, Central America, and the northeastern regions of South America. The tungara frog exhibits interesting behavior in male/female interactions. Male vocalizations are critical in female mate choice, and females often prefer males who give complex mating calls at a lower frequency rather than simple calls at a higher frequency (from Wikipedia entry). This sample of a female individual (aEngPut4/MGP-1488.2) is part of a trio assembly (mother aEngPut2/MGP-1444.1, father aEngPut3/MGP-1452.1), with Hi-C sequence data from the sister offspring aEngPut1/MGP-1488.1 used for scaffolding. The individuals were bred in captivity and procured by Marcos Gridi-Papp to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). More...
AccessionPRJNA1144444
TypeUmbrella project
OrganismEngystomops pustulosus[Taxonomy ID: 76066]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Leptodactylidae; Leiuperinae; Engystomops; Engystomops pustulosus
SubmissionRegistration date: 5-Aug-2024
Vertebrate Genomes Project
RelevanceReference Genome
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)24
WGS master2
SRA Experiments5
Publications
PubMed1
PMC1
Other datasets
BioSample4
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases496
Data volume, Tbytes0.19
This project encompasses the following 6 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
SRA or Trace
Total

2
4
6
BioProject
accession
Assembly
level
NameTitle
PRJNA1135146 ChromosomesEngystomops pustulosusEngystomops pustulosus (Tungara frog) genome, aEngPut4, paternal haplotype (Vertebrate Genomes Project)
PRJNA1135147 ChromosomesEngystomops pustulosusEngystomops pustulosus (Tungara frog) genome, aEngPut4, maternal haplotype (Vertebrate Genomes Project)
PRJNA1145945 SRA or TraceEngystomops pustulosus (Tungara frog) genome, aEngPut1, sequence dataEngystomops pustulosus (Tungara frog) genome, aEngPut1, sequence data (Vertebrate Genomes Project)
PRJNA1145946 SRA or TraceEngystomops pustulosus (Tungara frog) genome, aEngPut2, sequence dataEngystomops pustulosus (Tungara frog) genome, aEngPut2, sequence data (Vertebrate Genomes Project)
PRJNA1145947 SRA or TraceEngystomops pustulosus (Tungara frog) genome, aEngPut3, sequence dataEngystomops pustulosus (Tungara frog) genome, aEngPut3, sequence data (Vertebrate Genomes Project)
List all 6 'Genome sequencing' projects...

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