ID 183193 - BioProject

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Accession: PRJNA183193 ID: 183193

Lactobacillus paracasei Comparative Genomics

See Genome Information for Lacticaseibacillus paracasei

Lactobacillus paracasei is a member of the normal human and animal gut microbiota and is used extensively in the food industry in starter cultures for dairy products or as probiotics. We have sequenced the genomes of 34 different L. paracasei strains, and performed a comparative genomics analysis, including also three reference genomes. We analysed genome synteny and content, focussing on the pan-genome, core genome and variable genome.

Accession	PRJNA183193
Type	Umbrella Comparative genomics project (Subtype:Comparative genomics)
Organism	Lacticaseibacillus paracasei[Taxonomy ID: 1597] Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus paracasei
Publications	Smokvina T et al., "Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity.", PLoS One, 2013;8(7):e68731
Submission	Registration date: 7-Dec-2012 Danone Research

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	13627
WGS master	34
Protein Sequences	100726
Publications
PubMed	1
PMC	1
Other datasets
BioSample	34
Assembly	34

This project encompasses the following 34 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Contigs

BioProject accession	Assembly level	Organism	Title
PRJNA178422	Contigs	Lacticaseibacillus paracasei subsp. paracasei CNCM I-2877	Lacticaseibacillus paracasei subsp. paracasei CNCM I-2877 Genome sequencing and assembly (Danone Research)
PRJNA178429	Contigs	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4270	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4270 Genome sequencing and assembly (Danone Research)
PRJNA178443	Contigs	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4648	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4648 Genome sequencing and assembly (Danone Research)
PRJNA178439	Contigs	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4649	Lacticaseibacillus paracasei subsp. paracasei CNCM I-4649 Genome sequencing and assembly (Danone Research)
PRJNA178452	Contigs	Lacticaseibacillus paracasei subsp. paracasei Lpp120	Lacticaseibacillus paracasei subsp. paracasei Lpp120 Genome sequencing and assembly (Danone Research)

List all 34 'Genome sequencing' projects...

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Lactobacillus paracasei Comparative Genomics

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