In the Genome Project for Food Pathogens project, FDA has partnered with U.C. Davis and Agilent to map the DNA of 100,000 pathogen strains to stop foodborne illness outbreaks faster.
| Accession | PRJNA186441 |
| Type | Umbrella project (Subtype:Disease) |
| Keyword | GMI |
| Submission | Registration date: 11-Jan-2013
100K Genome Project
CDC |
| NCBI Links | |
| Related Resources | |
| Relevance | Medical, Industrial |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 566735 |
| WGS master | 2226 |
| Genomic DNA | 49 |
| SRA Experiments | 5014 |
| Protein Sequences | 1682498 |
| Publications |
| PubMed | 4 |
| PMC | 4 |
| Other datasets |
| BioSample | 6050 |
| Assembly | 2259 |
100K Food Pathogen Project encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
1
1
1
3
6
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA203445 | Complete genome | Bacteria | Major food bacterial pathogens in the united states and around the world, including Salmonella enterica, E. coli, Shigella, Listeria monocytogenes, Campylobacter Jejuni, and Vibrio parahaemolyticus genome sequencing (University of California...) | | PRJNA1136879 | No data links | Ecology of Cat Oral Microbiomes in Inflammatory Dental Disease | Ecology of Cat Oral Microbiomes in Inflammatory Dental Disease (Bart C Weimer) | | PRJNA1095494 | SRA or Trace | Escherichia coli | WGS of Intrauterine E. coli from cows with early postpartum uterine infection (Bart C Weimer) | | PRJNA1142533 | No data links | Escherichia coli | Multidrug-resistant Escherichia coli from pre-weaned dairy calves (Bart C Weimer) | | PRJNA209204 | Contigs | FDA CFSAN, 100K Genome Project | FDA CFSAN, 100K Genome Project (University of California...) |
List all 6 'Genome sequencing' projects...BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA203445 | Complete genome | Bacteria | Major food bacterial pathogens in the united states and around the world, including Salmonella enterica, E. coli, Shigella, Listeria monocytogenes, Campylobacter Jejuni, and Vibrio parahaemolyticus genome sequencing (University of California...) | | PRJNA1136879 | No data links | Ecology of Cat Oral Microbiomes in Inflammatory Dental Disease | Ecology of Cat Oral Microbiomes in Inflammatory Dental Disease (Bart C Weimer) | | PRJNA1095494 | SRA or Trace | Escherichia coli | WGS of Intrauterine E. coli from cows with early postpartum uterine infection (Bart C Weimer) | | PRJNA1142533 | No data links | Escherichia coli | Multidrug-resistant Escherichia coli from pre-weaned dairy calves (Bart C Weimer) | | PRJNA209204 | Contigs | FDA CFSAN, 100K Genome Project | FDA CFSAN, 100K Genome Project (University of California...) | | PRJNA1071196 | No data links | Vibrio from sea otters and environment | Vibrio from sea otters and environment (Bart C Weimer) |
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